Detailed information NTG1036491

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ACA097_RS26355
• Genome accession: NZ_CP166971
• Coordinates: 5669856..5671067 (+)
• Length: 403 a.a.
• NCBI ID: WP_201752499.1
• Uniprot ID: -
• Organism: Pseudomonas sp. QL9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5664856..5676067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACA097_RS26330 (ACA097_26320)	-	5665499..5666779 (-)	1281	WP_043252672.1	OprD family porin	-
ACA097_RS26335 (ACA097_26325)	-	5666980..5668161 (-)	1182	WP_160287280.1	MFS transporter	-
ACA097_RS26340 (ACA097_26330)	-	5668450..5669007 (-)	558	WP_371367101.1	putative glycolipid-binding domain-containing protein	-
ACA097_RS26345 (ACA097_26335)	-	5669004..5669366 (-)	363	WP_371367103.1	MmcQ/YjbR family DNA-binding protein	-
ACA097_RS26350 (ACA097_26340)	-	5669385..5669663 (-)	279	WP_371367106.1	peptidylprolyl isomerase	-
ACA097_RS26355 (ACA097_26345)	pilU	5669856..5671067 (+)	1212	WP_201752499.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ACA097_RS26360 (ACA097_26350)	-	5671307..5672569 (-)	1263	WP_371367108.1	OprD family porin	-
ACA097_RS26365 (ACA097_26355)	-	5672957..5673733 (+)	777	WP_371367110.1	IclR family transcriptional regulator	-
ACA097_RS26370 (ACA097_26360)	-	5673941..5674993 (+)	1053	WP_371367112.1	Gfo/Idh/MocA family protein	-
ACA097_RS26375 (ACA097_26365)	-	5675098..5675913 (+)	816	WP_371367114.1	sugar phosphate isomerase/epimerase family protein	-

Sequence

Protein

• Length: 403 a.a.
• Molecular weight: 44276.69 Da
• Isoelectric Point: 6.1322

>NTDB_id=1036491 ACA097_RS26355 WP_201752499.1 5669856..5671067(+) (pilU) [Pseudomonas sp. QL9]
MEIQAMLRILSSQDGSDLYLSTGAPPCAKFNGVLKPLSNEPLKAGEVAAIANSIMDEEQRAEFERELEMNLAISVTGVGR
FRINIFKQRNEVSIVARNIKLDIPLFEDLKLPEVLLKVVMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIVTIED
PIEYVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVRTQDGKRRAAVEVLLGTATISDIIKRGEFSMIKEIMDKSRALGMQTFDQAL
FDLAVEGAISEEEAVKNADSANNLRLKLKLYKDNPATAMAQAAKAQPAAPTPPPAAPVEASSWGLELALEEIKAEDEEGK
PGI

Nucleotide

• Length: 1212 bp

>NTDB_id=1036491 ACA097_RS26355 WP_201752499.1 5669856..5671067(+) (pilU) [Pseudomonas sp. QL9]
ATGGAAATCCAAGCGATGCTGCGGATCCTGTCCAGTCAGGACGGTTCCGACCTCTACCTGTCCACCGGCGCGCCGCCCTG
CGCCAAGTTCAACGGTGTGCTCAAGCCCCTGTCCAACGAACCGCTGAAAGCCGGCGAAGTCGCGGCCATCGCCAACTCGA
TCATGGACGAGGAGCAGCGCGCCGAATTCGAACGCGAGCTGGAGATGAACCTGGCGATCTCGGTCACCGGCGTCGGGCGC
TTCCGTATCAACATCTTCAAGCAGCGCAACGAGGTTTCCATCGTTGCGCGGAACATCAAGCTGGACATCCCGCTGTTCGA
GGACCTGAAGCTGCCCGAAGTGCTGCTCAAGGTAGTGATGGAGAAGCGCGGCCTGGTGCTCTTCGTCGGCGGCACCGGCT
CGGGCAAGTCGACCTCCCTGGCGGCGCTGATCGACCACCGCAACCGCAACAGCGGCGGCCACATCGTCACCATCGAAGAC
CCCATCGAGTACGTGCACCGGCACCGCAAGTCGATCATCAACCAGCGCGAAGTGGGCGTGGACACCCGCAGCTTCCATGC
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGCGACCGCGAGACCATGGAGCACG
CCCTGGCCTTCGCCGACACCGGCCACCTGGCGATCTCGACGCTCCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCGGAGGAGCGTCGTCCGCAACTGCTCAACGACCTGGGCAACAACCTCAAGGCGTTCGTCTCGCAGCG
CCTGGTGCGCACCCAGGACGGCAAGCGCCGCGCCGCGGTGGAGGTGCTGCTGGGCACCGCGACCATCAGCGACATCATCA
AGCGCGGCGAATTCAGCATGATCAAGGAGATCATGGACAAGTCCCGCGCCCTCGGCATGCAGACCTTCGACCAGGCGCTG
TTCGACCTGGCCGTGGAAGGCGCGATCAGCGAAGAGGAAGCGGTGAAGAACGCCGACTCGGCGAACAACCTGCGCCTGAA
GCTCAAGCTGTACAAGGACAACCCGGCAACCGCCATGGCCCAGGCGGCCAAGGCCCAGCCCGCTGCGCCGACGCCTCCGC
CGGCTGCCCCGGTAGAGGCTTCCAGTTGGGGCCTGGAACTGGCCCTGGAAGAGATCAAGGCCGAGGACGAGGAAGGCAAG
CCGGGCATTTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (110-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.98	87.097	0.496
pilU	Acinetobacter baylyi ADP1	53.693	87.345	0.469
pilU	Vibrio cholerae strain A1552	52.286	86.849	0.454
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.896	95.782	0.382