Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACA097_RS09135 Genome accession   NZ_CP166971
Coordinates   1942244..1942738 (-) Length   164 a.a.
NCBI ID   WP_043248969.1    Uniprot ID   -
Organism   Pseudomonas sp. QL9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1937244..1947738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA097_RS09115 (ACA097_09110) cobG 1937637..1938971 (+) 1335 WP_371369887.1 precorrin-3B synthase -
  ACA097_RS09120 (ACA097_09115) - 1938964..1939590 (+) 627 WP_371369889.1 precorrin-8X methylmutase -
  ACA097_RS09125 (ACA097_09120) - 1939587..1940330 (+) 744 WP_371369891.1 precorrin-2 C(20)-methyltransferase -
  ACA097_RS09130 (ACA097_09125) cobJ 1940330..1941982 (+) 1653 WP_371369893.1 precorrin-3B C(17)-methyltransferase -
  ACA097_RS09135 (ACA097_09130) ssb 1942244..1942738 (-) 495 WP_043248969.1 single-stranded DNA-binding protein Machinery gene
  ACA097_RS09140 (ACA097_09135) - 1942756..1944144 (-) 1389 WP_160285722.1 MFS transporter -
  ACA097_RS09145 (ACA097_09140) uvrA 1944355..1947189 (+) 2835 WP_043248965.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18156.09 Da        Isoelectric Point: 5.2781

>NTDB_id=1036469 ACA097_RS09135 WP_043248969.1 1942244..1942738(-) (ssb) [Pseudomonas sp. QL9]
MARGVNKVILVGNVGGDPETRYLPNGNAVTNVTLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIVAEYVRKGSQIYVE
GSLRTRKWQGQDGQDKYTTEIVVDINGNMQLLGGRPGAGGDDAPRAPREPQQRPQQAPRPAPQQQAPAPQPAPDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1036469 ACA097_RS09135 WP_043248969.1 1942244..1942738(-) (ssb) [Pseudomonas sp. QL9]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGCAACGTCGGTGGTGACCCGGAAACCCGCTACCTGCCCAACGGCAA
TGCGGTGACCAACGTCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGTCAGCAACAGGAACGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGTCGCCTGGCGGAAATCGTCGCCGAGTACGTGCGCAAGGGTTCGCAGATCTACGTCGAA
GGCAGCCTGCGTACCCGCAAGTGGCAGGGGCAGGACGGCCAGGACAAGTACACCACCGAGATCGTGGTAGACATCAACGG
CAACATGCAGCTGCTCGGCGGTCGTCCGGGCGCCGGTGGCGACGACGCCCCGCGCGCTCCGCGTGAGCCGCAGCAGCGTC
CGCAACAGGCTCCGCGCCCGGCCCCGCAGCAGCAGGCTCCGGCCCCGCAGCCGGCTCCGGACTACGACAGCTTCGACGAC
GACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.545

100

0.585
  ssb Glaesserella parasuis strain SC1401

50

100

0.555
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.488
  ssb Neisseria meningitidis MC58

43.75

100

0.47

Multiple sequence alignment