Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AB9V61_RS03420 Genome accession   NZ_CP166925
Coordinates   775206..776543 (-) Length   445 a.a.
NCBI ID   WP_011167664.1    Uniprot ID   Q48NJ1
Organism   Pseudomonas savastanoi pv. phaseolicola strain HB10Y     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 770206..781543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9V61_RS03410 (AB9V61_03410) - 773067..774176 (-) 1110 WP_041924424.1 efflux RND transporter periplasmic adaptor subunit -
  AB9V61_RS03415 (AB9V61_03415) - 774258..774875 (-) 618 WP_041924425.1 TetR/AcrR family transcriptional regulator -
  AB9V61_RS03420 (AB9V61_03420) pilR 775206..776543 (-) 1338 WP_011167664.1 sigma-54 dependent transcriptional regulator Regulator
  AB9V61_RS03425 (AB9V61_03425) pilS 776546..778138 (-) 1593 WP_011167665.1 nitrogen regulation protein NR(II) Regulator
  AB9V61_RS03430 (AB9V61_03430) - 778128..778367 (-) 240 WP_002551997.1 PP0621 family protein -
  AB9V61_RS03435 (AB9V61_03435) - 778497..779519 (-) 1023 WP_005733851.1 outer membrane protein assembly factor BamD -
  AB9V61_RS03440 (AB9V61_03440) rluD 779669..780631 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB9V61_RS03445 (AB9V61_03445) pgeF 780628..781356 (+) 729 WP_011167666.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49798.88 Da        Isoelectric Point: 6.6378

>NTDB_id=1036281 AB9V61_RS03420 WP_011167664.1 775206..776543(-) (pilR) [Pseudomonas savastanoi pv. phaseolicola strain HB10Y]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPCAQPARSIDSRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGSQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGTQPVARLNAQALDTLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQEHNGPSLADIDNLED
YLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1036281 AB9V61_RS03420 WP_011167664.1 775206..776543(-) (pilR) [Pseudomonas savastanoi pv. phaseolicola strain HB10Y]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGACGAGCCGGATATCCGCGAACTGCTGGAGATCACTCTGGGGCGCAT
GAAACTCGACACCCGATGCGCCCGCAATGTTGCCGAGGCCCACGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAACGGCCTTGAGCTGGTGCAGCATATTCAGCACGGCTACCCCCATGTGCCAGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATTAATGCGCTCAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
TGACCTCGGCAGGCTGCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCTTGCGCCCAGCCAGCCCGCAGCATCGACAGCC
GCCTGCTGGGCGACTCGCTGGCGATGCGTACCTTGCGCAACCAGATCGGCAAGCTGGCCCGCAGCCAGGCACCGATCTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAGCTTGTAGCGCGGCTGATCCACGAGCAGGGTCCGCGCATCGATAAACCGTT
CATACCGGTGAATTGCGGGGCCATTCCTTCCGAGCTGATGGAGAGTGAATTCTTTGGCCATCGCAAGGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCACATACCGGGACGCTGTTTCTCGACGAGGTGGCCGACCTACCG
CTGGCCATGCAGGTAAAGCTGTTGCGAGCCATCCAGGAAAAATCAATCCGCAGTGTAGGCAGCCAGCAAGAACAGATTGT
GGACGTACGCATTCTGTGCGCCACGCACAAGAACCTTAATGCAGAGGTTGCGGCAGGCCGTTTCCGTCAGGATCTGTATT
ACCGGTTGAACGTGATCGAAGTGCGCGTCCCCTCATTGCGCGAACGGCGCGAGGACATCGATCAACTGGCAGCCAGTGTT
CTAAAGCGACTTGCTGGCAATGGCACGCAACCGGTGGCGCGCCTGAATGCGCAGGCGCTCGACACGCTGAAGAGCTACCG
ATTCCCCGGCAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTCTGTGAAAACGATGAAATCCATGCCA
GCGACCTGCGCCTTGCAGAGTCCGCCAGCCCCCAGGAGCACAACGGTCCTAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCATCGAGCGCAAGCTCATTCTGCAGGCCCTGGAAGAAACCCGCTGGAACCGTACCGCAGCGGCAGAAAG
GCTCAGCTTGTCCTTCAGATCGCTGCGTTACCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q48NJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.703

99.775

0.775
  pilR Acinetobacter baumannii strain A118

48.491

100

0.506
  luxO Vibrio cholerae strain A1552

37.162

99.775

0.371

Multiple sequence alignment