Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AB9V61_RS03425 Genome accession   NZ_CP166925
Coordinates   776546..778138 (-) Length   530 a.a.
NCBI ID   WP_011167665.1    Uniprot ID   Q48NJ0
Organism   Pseudomonas savastanoi pv. phaseolicola strain HB10Y     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 771546..783138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9V61_RS03410 (AB9V61_03410) - 773067..774176 (-) 1110 WP_041924424.1 efflux RND transporter periplasmic adaptor subunit -
  AB9V61_RS03415 (AB9V61_03415) - 774258..774875 (-) 618 WP_041924425.1 TetR/AcrR family transcriptional regulator -
  AB9V61_RS03420 (AB9V61_03420) pilR 775206..776543 (-) 1338 WP_011167664.1 sigma-54 dependent transcriptional regulator Regulator
  AB9V61_RS03425 (AB9V61_03425) pilS 776546..778138 (-) 1593 WP_011167665.1 nitrogen regulation protein NR(II) Regulator
  AB9V61_RS03430 (AB9V61_03430) - 778128..778367 (-) 240 WP_002551997.1 PP0621 family protein -
  AB9V61_RS03435 (AB9V61_03435) - 778497..779519 (-) 1023 WP_005733851.1 outer membrane protein assembly factor BamD -
  AB9V61_RS03440 (AB9V61_03440) rluD 779669..780631 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB9V61_RS03445 (AB9V61_03445) pgeF 780628..781356 (+) 729 WP_011167666.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58146.96 Da        Isoelectric Point: 7.0058

>NTDB_id=1036282 AB9V61_RS03425 WP_011167665.1 776546..778138(-) (pilS) [Pseudomonas savastanoi pv. phaseolicola strain HB10Y]
MTADTPSLASPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
SLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYVSFGTPSVSNDYVQAGSLG
ALCFAAAMLVQALTARMQVSEVLAEQRAADVDSLEELNALILQRMRTGILVLDANRQVLLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLVNPIMVPRSVTTSPIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVTEFRSSTAPN
QSIHVDISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHLAKLFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1036282 AB9V61_RS03425 WP_011167665.1 776546..778138(-) (pilS) [Pseudomonas savastanoi pv. phaseolicola strain HB10Y]
GTGACCGCTGACACGCCCTCGCTTGCCAGCCCACAGGCGCAAAGGATTCTGCGACTTTACCACCTTTATCGACTGACCAT
CGGCGTGGTACTGGTCCTGCTGATTTCCAGCAGTCTGGAAACCGAACTGTTGCAACTGGCCAATCCAAACCTGTTCCGCT
CGGGTTGCTGGCTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAGCGTCCCAGCCGTCAGGCGCAGCTGTTC
AGTCTGGCAATGACTGACGCAATCATGCTCTCTGCGCTGTTCTACGCGGCGGGTGGCCCTTCCAGCGGCATCGGCAATCT
GTTGATTGCTTCCGTAGCAATCAGCAATGTATTGCTGCGGGGCCGTATCGGTTTGCTGATCGCCGCCGTTTCTGCCATCG
GCATCATCTACCTGACGTTCTATGTCAGCTTCGGTACACCGTCGGTTTCCAACGACTACGTGCAGGCTGGCTCTCTGGGT
GCCCTGTGCTTCGCCGCCGCAATGCTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAAGTGCTGGCCGAACAGCG
TGCAGCGGATGTCGACAGCCTTGAAGAACTCAACGCGCTGATTCTGCAACGCATGCGTACCGGCATTCTGGTACTGGATG
CCAACCGTCAGGTGCTGCTGGCCAATCAAGGAGCCCTGACCCTGCTCGGCCACGAGCGACTGGTCGGCCAGGTTATCGAC
GCTTACTCGCCACAGTTGGTGGAACGCCTGCGTCAGTGGCTCGTCAACCCGATCATGGTGCCGCGCAGCGTCACGACTTC
ACCCATCGGGCCGGTGCTGCAACCGAGCTTTGCCGCACTCAATCGTGGCGATCAGCGCCAGACGCTGATCTTTCTTGAAG
ACCTGTCGCAAATTGCTCATCAGGCGCAGCAGCTCAAGCTCGCCGCGCTGGGACGCCTGACCGCCGGGATTGCCCACGAG
ATACGCAACCCGCTGGGCGCAGTCAGCCATGCCGCACAGTTACTCAACGAGTCGGAAGAACTCAGCGCAGCGGACCGACG
CCTGGGGCAGATCATTCATGATCAGTCGGGGCGTATTGATCGGGTCATCGAAAATGTTCTGCAATTGTCGCGCAGACGCG
AAGCGCAGCCCGAACTGCTCGATCTGAAAACCTGGCTGGAACACTTTGTCACTGAATTTCGCAGTTCCACTGCGCCCAAT
CAGTCGATTCATGTCGACATAAGCCCCGGCACGCTGACAACCCGCATGGATTCCGGGCAACTGACCCAGATCATGACCAA
CCTGCTACAGAACGGCCTGCGCTACAGCGGCAGAAATCATTCGTCAGCGCAGGTCTGGCTGAAGCTGCATCACGACCGAC
AAAGCGATTTGCCGATTCTGGAAGTACAGGACGACGGGCCGGGGGTCAGCGAGCAACATTTGGCCAAGCTATTCGAGCCG
TTTTTCACCACGGAAAGCAAAGGCACCGGTCTTGGTCTATATCTGTCACGCGAGCTGTGCGAAAGCAATCAGGCGCACCT
GGAATACGTCCCGCGGCAAGGTGGCGGCAGTTGTCTGCGCATAACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q48NJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.394

100

0.615

Multiple sequence alignment