Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AB9V62_RS17325 Genome accession   NZ_CP166923
Coordinates   3596293..3597633 (+) Length   446 a.a.
NCBI ID   WP_206408473.1    Uniprot ID   -
Organism   Pseudomonas oleovorans strain ERA     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3591293..3602633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9V62_RS17300 (AB9V62_17300) pgeF 3591306..3592037 (-) 732 WP_206408469.1 peptidoglycan editing factor PgeF -
  AB9V62_RS17305 (AB9V62_17305) rluD 3592034..3593008 (-) 975 WP_206408470.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB9V62_RS17310 (AB9V62_17310) - 3593147..3594139 (+) 993 WP_206408471.1 outer membrane protein assembly factor BamD -
  AB9V62_RS17315 (AB9V62_17315) - 3594466..3594708 (+) 243 WP_017678193.1 PP0621 family protein -
  AB9V62_RS17320 (AB9V62_17320) pilS 3594698..3596290 (+) 1593 WP_206408472.1 ATP-binding protein Regulator
  AB9V62_RS17325 (AB9V62_17325) pilR 3596293..3597633 (+) 1341 WP_206408473.1 sigma-54 dependent transcriptional regulator Regulator
  AB9V62_RS17330 (AB9V62_17330) thiO 3597720..3598811 (-) 1092 WP_206408474.1 glycine oxidase ThiO -
  AB9V62_RS17335 (AB9V62_17335) - 3598901..3599410 (+) 510 WP_095460640.1 GspH/FimT family pseudopilin -
  AB9V62_RS17340 (AB9V62_17340) - 3599423..3600040 (+) 618 WP_257597380.1 GspH/FimT family pseudopilin -
  AB9V62_RS17345 (AB9V62_17345) pilV 3600049..3600609 (+) 561 WP_095460638.1 type IV pilus modification protein PilV -
  AB9V62_RS17350 (AB9V62_17350) - 3600606..3601454 (+) 849 WP_095460637.1 PilW family protein -
  AB9V62_RS17355 (AB9V62_17355) - 3601451..3602098 (+) 648 WP_206408475.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49764.00 Da        Isoelectric Point: 5.7840

>NTDB_id=1036266 AB9V62_RS17325 WP_206408473.1 3596293..3597633(+) (pilR) [Pseudomonas oleovorans strain ERA]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRAPEGEETPVDSRLLGDSPPMKSLRKQIQKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRAEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLADVM
LARLADGTGLAAAKLHPDALEKLKNYRFPGNVRELENMLERAYTLCEDDQITPSDLRLADASGPSNEGGEASLAQIDNLE
DHLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1036266 AB9V62_RS17325 WP_206408473.1 3596293..3597633(+) (pilR) [Pseudomonas oleovorans strain ERA]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGTGAGCTGCTGGAAATCACCCTCGGACGCATGAA
GCTGGACACCCGCAGCGCGCGCAACGTCAAGGAAGCGCGTGAATGGCTGGCGCGCGAGCCATTCGATCTGTGCCTGACCG
ATATGCGCCTGCCCGATGGCACCGGCCTGGATCTGGTGCAGCACATTCAACAACGTCATCCACAGGTACCCGTGGCGATG
ATCACCGCCTACGGCAGCCTGGACACCGCGATCAACTCGCTCAAGGCCGGCGCCTTCGACTTTCTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTCGCCACGGCCCTGCGCATTCGCGCGCCCGAGGGCGAGGAAACCCCGGTCGACAGCC
GCCTGCTCGGCGACTCGCCACCGATGAAATCGCTGCGCAAGCAGATCCAGAAACTCTCGCGCAGCCAGGCGCCGGTCTAT
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAACTGGTAGCGCGCCTGATTCACGAGCAGGGGCCGCGCGCCGAGCAGCCGTT
CGTACCGGTCAACTGCGGCGCTATTCCCTCGGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAAGACAAGCAGGGGCTGTTCCAAGCGGCCAATGGCGGCACCCTGTTCCTCGACGAGGTCGCCGACCTGCCG
CTGCCCATGCAGGTGAAACTGCTGCGTGCGATTCAGGAAAAAGCCGTGCGCGCAGTCGGCGGCCAGCAAGAAGTAGTTGT
CGATGTGCGCATTCTCTGCGCCACCCACAAGGACCTTGCCGCCGAAGTCGCTGCTGGCCGCTTCCGTCAGGATCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTCCCGCCGCTGCGTGAGCGGCGCGAAGATATCGCCCAATTGGCTGACGTGATG
CTCGCGCGCCTGGCCGATGGCACCGGCCTAGCCGCTGCCAAACTGCACCCCGATGCCCTGGAAAAGCTCAAGAACTACCG
TTTTCCCGGTAACGTGCGCGAGCTGGAAAACATGCTCGAACGTGCCTATACCCTGTGCGAAGACGACCAGATCACGCCCA
GCGACCTGCGCCTGGCCGACGCCAGCGGCCCCAGCAACGAAGGCGGCGAAGCCAGCCTGGCGCAGATCGACAACCTCGAG
GACCACCTCGAGGACATCGAACGCAAGCTGATCATGCAGGCACTGGAAGAAACCCGCTGGAACCGCACGGCGGCGGCTCA
ACGCCTGGGCCTGACCTTCCGCTCGATGCGCTATCGCCTGAAGAAGCTGGGTATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.013

100

0.89
  pilR Acinetobacter baumannii strain A118

49.13

100

0.507
  luxO Vibrio cholerae strain A1552

38.341

100

0.383

Multiple sequence alignment