Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AB9V62_RS17320 Genome accession   NZ_CP166923
Coordinates   3594698..3596290 (+) Length   530 a.a.
NCBI ID   WP_206408472.1    Uniprot ID   -
Organism   Pseudomonas oleovorans strain ERA     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3589698..3601290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9V62_RS17295 (AB9V62_17295) - 3590548..3591138 (-) 591 WP_241198024.1 TetR/AcrR family transcriptional regulator -
  AB9V62_RS17300 (AB9V62_17300) pgeF 3591306..3592037 (-) 732 WP_206408469.1 peptidoglycan editing factor PgeF -
  AB9V62_RS17305 (AB9V62_17305) rluD 3592034..3593008 (-) 975 WP_206408470.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB9V62_RS17310 (AB9V62_17310) - 3593147..3594139 (+) 993 WP_206408471.1 outer membrane protein assembly factor BamD -
  AB9V62_RS17315 (AB9V62_17315) - 3594466..3594708 (+) 243 WP_017678193.1 PP0621 family protein -
  AB9V62_RS17320 (AB9V62_17320) pilS 3594698..3596290 (+) 1593 WP_206408472.1 ATP-binding protein Regulator
  AB9V62_RS17325 (AB9V62_17325) pilR 3596293..3597633 (+) 1341 WP_206408473.1 sigma-54 dependent transcriptional regulator Regulator
  AB9V62_RS17330 (AB9V62_17330) thiO 3597720..3598811 (-) 1092 WP_206408474.1 glycine oxidase ThiO -
  AB9V62_RS17335 (AB9V62_17335) - 3598901..3599410 (+) 510 WP_095460640.1 GspH/FimT family pseudopilin -
  AB9V62_RS17340 (AB9V62_17340) - 3599423..3600040 (+) 618 WP_257597380.1 GspH/FimT family pseudopilin -
  AB9V62_RS17345 (AB9V62_17345) pilV 3600049..3600609 (+) 561 WP_095460638.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59024.14 Da        Isoelectric Point: 8.4707

>NTDB_id=1036265 AB9V62_RS17320 WP_206408472.1 3594698..3596290(+) (pilS) [Pseudomonas oleovorans strain ERA]
MTADTSVQNSTQGQRILRLYHFYRLTIGLALILLISSNLDEQLLDVVHIELFRTGSWVYLILNIFIAVLVQKPKHLMQLF
SLALVDVIFLSALFYAAGGTPSGIGNLLVVAVAIANILLRGRVGLLIAAIAAIALIYLTFYLSLSRPAAAAQYVQAGALG
ALCFAGALFIQGITRRLQISETLAEKRAADVANLEELNAQILQRMRTGILVLDTQHRVLLANQGATQLLGRGELTGKIID
PHCPELVKRLQQWLHNPTLRPDSLQAQFDGPVLQPSFISLQRGDQQHTLVFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPAD
RQLHLETQGGSLQTRMDPHQLNQVLTNLVQNGLRYSAQKHRLGQVWLRLFRDAESDLPVLQILDDGPGVPPEQEPHIFEP
FYTTENKGTGLGLYISRELCESNQARLDYKPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1036265 AB9V62_RS17320 WP_206408472.1 3594698..3596290(+) (pilS) [Pseudomonas oleovorans strain ERA]
GTGACCGCTGACACCAGCGTACAGAACAGCACACAAGGGCAGCGCATCCTCAGGCTCTATCACTTCTATCGCCTGACCAT
CGGCCTGGCGCTGATCCTGCTGATCTCCAGCAACCTCGACGAGCAGTTGCTGGATGTCGTGCATATCGAGCTGTTTCGCA
CCGGCAGCTGGGTTTACCTGATCCTCAACATCTTCATCGCCGTACTGGTGCAGAAACCCAAGCACCTGATGCAGCTGTTC
AGCCTGGCGCTGGTCGATGTGATCTTTCTCTCGGCCCTGTTCTATGCAGCGGGCGGCACGCCCAGCGGCATCGGCAACCT
GCTGGTGGTCGCCGTAGCGATCGCCAACATTCTGCTGCGCGGCCGCGTTGGCCTGTTGATCGCCGCCATCGCCGCGATAG
CACTGATCTACCTGACCTTCTACCTCAGCCTCAGCCGCCCGGCTGCCGCCGCCCAGTACGTGCAGGCTGGCGCCCTCGGC
GCGCTGTGTTTCGCTGGCGCGTTATTCATCCAGGGCATCACCCGACGCCTGCAGATCAGTGAAACCCTGGCCGAAAAGCG
TGCAGCCGACGTAGCCAACCTCGAAGAGCTCAATGCGCAGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACA
CCCAACACCGAGTGCTGCTGGCCAACCAGGGCGCAACGCAGTTGCTCGGGCGCGGTGAGTTGACCGGCAAGATCATCGAC
CCGCATTGCCCCGAGCTGGTCAAACGCCTGCAACAATGGCTGCACAACCCGACCCTGCGCCCGGACAGCCTGCAGGCCCA
GTTCGATGGCCCGGTACTGCAGCCAAGCTTCATCTCCCTGCAACGCGGTGACCAGCAGCACACCCTGGTGTTTCTCGACG
ACATCTCGCAGATCGCCCAGCAGGCGCAACAGCTCAAGCTGGCCTCGCTCGGCCGCCTGACCGCCGGTATCGCCCACGAA
ATTCGCAACCCGCTCGGCGCCATCAGCCACGCCGCGCAGTTGTTGCAGGAATCGGAAGACCTGCAAGGCCCGGATCAGCG
CCTGGCGCAGATCATTCAGGATCACTCCAAACGCATGAACCTGGTGATCGAGAACGTCCTGCAGCTCTCGCGCCGGCGCC
AGGCCGAACCGCAACTGCTCGACCTGAAATACTGGCTACACCGCTTCGCCAGCGAATTTCGCAGCTCGGCACCGGCCGAC
CGGCAGCTCCATCTGGAAACCCAGGGCGGTAGCCTGCAGACGCGCATGGATCCACACCAGTTGAACCAGGTACTGACCAA
TCTGGTACAAAACGGCCTGCGCTACAGCGCCCAGAAGCACCGGCTCGGCCAGGTCTGGCTGCGCCTGTTCCGCGATGCGG
AAAGCGACCTGCCGGTACTGCAGATTCTCGACGACGGCCCCGGCGTGCCGCCCGAGCAGGAACCGCACATCTTCGAGCCC
TTCTACACCACGGAAAACAAGGGCACCGGCCTTGGCTTGTACATCTCGCGCGAGCTGTGCGAGAGCAACCAGGCTCGCCT
CGACTATAAACCTCGTGAAGGTGGCGGCAGTTGCTTTCGCATCACCTTCGCCCATCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(201-254)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.925

100

0.679

Multiple sequence alignment