Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABKQ09_RS20385 Genome accession   NZ_CP166870
Coordinates   4042544..4043059 (-) Length   171 a.a.
NCBI ID   WP_003326057.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain F4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4037544..4048059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKQ09_RS20355 (ABKQ09_20350) - 4037869..4038435 (-) 567 WP_219946933.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  ABKQ09_RS20360 (ABKQ09_20355) - 4038554..4039312 (-) 759 WP_268367673.1 exodeoxyribonuclease III -
  ABKQ09_RS20365 (ABKQ09_20360) - 4039509..4040429 (+) 921 WP_106035094.1 DMT family transporter -
  ABKQ09_RS20370 (ABKQ09_20365) - 4040520..4041188 (+) 669 WP_371176242.1 GntR family transcriptional regulator -
  ABKQ09_RS20375 (ABKQ09_20370) - 4041291..4042130 (-) 840 WP_268367674.1 MBL fold metallo-hydrolase -
  ABKQ09_RS20380 (ABKQ09_20375) rpsR 4042261..4042500 (-) 240 WP_003326058.1 30S ribosomal protein S18 -
  ABKQ09_RS20385 (ABKQ09_20380) ssbA 4042544..4043059 (-) 516 WP_003326057.1 single-stranded DNA-binding protein SsbA Machinery gene
  ABKQ09_RS20390 (ABKQ09_20385) rpsF 4043099..4043386 (-) 288 WP_003326056.1 30S ribosomal protein S6 -
  ABKQ09_RS20395 (ABKQ09_20390) ychF 4043499..4044599 (-) 1101 WP_003326055.1 redox-regulated ATPase YchF -
  ABKQ09_RS20400 (ABKQ09_20395) - 4044726..4046729 (-) 2004 WP_371176243.1 molybdopterin-dependent oxidoreductase -
  ABKQ09_RS20405 (ABKQ09_20400) - 4046779..4046985 (-) 207 WP_003326053.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18630.21 Da        Isoelectric Point: 4.7621

>NTDB_id=1035794 ABKQ09_RS20385 WP_003326057.1 4042544..4043059(-) (ssbA) [Bacillus atrophaeus strain F4]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGQYFGGGQNDNPFGGNQNNQKRNQGNSFNDDPFANDGK
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1035794 ABKQ09_RS20385 WP_003326057.1 4042544..4043059(-) (ssbA) [Bacillus atrophaeus strain F4]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCTAACGGTGCGGCTGTTGC
CACGTTTACTCTTGCGGTGAATCGTACGTTTACGAATCAGTCAGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCTGAAAACGTTGCAAACTTCCTTAAAAAAGGAAGCCTTGCAGGCGTGGATGGCCGTTTACAAACAAGA
AATTACGAAAACCAGCAGGGACAGCGCGTCTTCGTGACTGAAGTTCAGGCTGAAAGTGTTCAGTTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAATAGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATAATC
CATTTGGCGGAAATCAAAACAATCAGAAACGAAATCAAGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGCAAA
CCGATTGACATCTCAGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.256

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

57.955

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.988

0.398
  ssb Glaesserella parasuis strain SC1401

36.612

100

0.392

Multiple sequence alignment