Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AB1S55_RS05230 Genome accession   NZ_CP166840
Coordinates   1164235..1164615 (+) Length   126 a.a.
NCBI ID   WP_370980736.1    Uniprot ID   -
Organism   Agaribacterium sp. ZY112     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1159235..1169615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1S55_RS05205 (AB1S55_05195) pilU 1159856..1161004 (+) 1149 WP_370980732.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  AB1S55_RS05210 (AB1S55_05200) ruvX 1161013..1161456 (-) 444 WP_370980733.1 Holliday junction resolvase RuvX -
  AB1S55_RS05215 (AB1S55_05205) - 1161461..1162045 (-) 585 WP_370980734.1 YqgE/AlgH family protein -
  AB1S55_RS05220 (AB1S55_05210) - 1162126..1162995 (-) 870 WP_370980735.1 energy transducer TonB -
  AB1S55_RS05225 (AB1S55_05215) gshB 1163000..1163920 (-) 921 WP_370981573.1 glutathione synthase -
  AB1S55_RS05230 (AB1S55_05220) pilG 1164235..1164615 (+) 381 WP_370980736.1 twitching motility response regulator PilG Regulator
  AB1S55_RS05235 (AB1S55_05225) pilH 1164664..1165026 (+) 363 WP_370980737.1 twitching motility response regulator PilH -
  AB1S55_RS05240 (AB1S55_05230) - 1165032..1165574 (+) 543 WP_370980738.1 chemotaxis protein CheW -
  AB1S55_RS05245 (AB1S55_05235) - 1165680..1168040 (+) 2361 WP_370980739.1 methyl-accepting chemotaxis protein -
  AB1S55_RS05250 (AB1S55_05240) - 1168068..1168928 (+) 861 WP_370980740.1 protein-glutamate O-methyltransferase CheR -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13904.21 Da        Isoelectric Point: 7.8541

>NTDB_id=1035611 AB1S55_RS05230 WP_370980736.1 1164235..1164615(+) (pilG) [Agaribacterium sp. ZY112]
MEANLEHLKVMVIDDSKTIRRTAETLLKKVGCTVVTATDGFDALAKIADTRPNIIFVDIMMPRLDGYQTCALIKNNSEFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKGELIGAIETHIQ

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1035611 AB1S55_RS05230 WP_370980736.1 1164235..1164615(+) (pilG) [Agaribacterium sp. ZY112]
ATGGAAGCGAATCTCGAGCACCTCAAAGTGATGGTGATTGATGATAGTAAAACCATTCGCAGAACAGCTGAAACGCTGTT
AAAAAAAGTCGGTTGTACGGTTGTTACAGCTACAGATGGTTTCGATGCTCTAGCGAAAATCGCTGATACTCGTCCGAATA
TCATTTTCGTTGACATCATGATGCCGCGTTTAGATGGTTATCAAACCTGTGCGCTCATCAAAAACAACAGTGAATTTAAG
TCCACTCCTGTCATTATGCTATCGAGTAAAGATGGTTTATTTGACAAGGCCAAGGGGCGCATTGTTGGGTCGGATCAGTA
TCTCACCAAACCCTTTAGTAAAGGTGAATTGATCGGTGCGATTGAGACTCATATTCAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

72.8

99.206

0.722
  vicR Streptococcus mutans UA159

39.831

93.651

0.373
  pilH Synechocystis sp. PCC 6803

40.708

89.683

0.365

Multiple sequence alignment