Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AB1S55_RS01075 Genome accession   NZ_CP166840
Coordinates   234237..235304 (-) Length   355 a.a.
NCBI ID   WP_370979926.1    Uniprot ID   -
Organism   Agaribacterium sp. ZY112     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 229237..240304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1S55_RS01050 (AB1S55_01050) aroK 229826..230338 (-) 513 WP_370979921.1 shikimate kinase AroK -
  AB1S55_RS01055 (AB1S55_01055) pilQ 230338..232527 (-) 2190 WP_370979922.1 type IV pilus secretin PilQ -
  AB1S55_RS01060 (AB1S55_01060) - 232532..233053 (-) 522 WP_370979923.1 pilus assembly protein PilP -
  AB1S55_RS01065 (AB1S55_01065) - 233057..233674 (-) 618 WP_370979924.1 type 4a pilus biogenesis protein PilO -
  AB1S55_RS01070 (AB1S55_01070) - 233671..234234 (-) 564 WP_370979925.1 PilN domain-containing protein -
  AB1S55_RS01075 (AB1S55_01075) pilM 234237..235304 (-) 1068 WP_370979926.1 pilus assembly protein PilM Machinery gene
  AB1S55_RS01080 (AB1S55_01080) - 235444..237942 (+) 2499 WP_370979927.1 penicillin-binding protein 1A -
  AB1S55_RS01085 (AB1S55_01085) rpmE 237995..238207 (-) 213 WP_370981619.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38221.21 Da        Isoelectric Point: 4.2234

>NTDB_id=1035605 AB1S55_RS01075 WP_370979926.1 234237..235304(-) (pilM) [Agaribacterium sp. ZY112]
MGALDFLSKKHKPLIGLDISSTTIKLLEFSRHGGGYRVENYAVKPLPPNTVVEKNINEPEAVAQVLKALVQSARSKTKDA
AVAVSGSSVITKLVEMPGDLNDEQMEAYISTEADQYIPYPLEEVALDFDVQGPSSKNPDQVEVLLAACRSENVETRVAVL
AEAGLNPKVVDVEAYTMERAFELIREQLEDQDEQVVAVLDIGATMTTLSVLVDGSTIYTREQLFGGKQLTEEIQRRYGLS
AEEAGLAKKQGGLPDDYEGEVLEPFKDAVVQQVTRSLQFFFSSSQYNDVDHIILAGGVAALDGLAGLIEEKLGTPATVAN
PFANMSIASRVNSAALDGDAPSLMIAAGLALRGFE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1035605 AB1S55_RS01075 WP_370979926.1 234237..235304(-) (pilM) [Agaribacterium sp. ZY112]
ATGGGCGCTCTAGATTTTCTAAGTAAAAAACACAAACCGCTGATTGGGCTGGATATCAGTTCCACTACCATTAAGCTGTT
GGAGTTTAGCAGGCATGGTGGAGGCTATCGCGTTGAAAACTACGCTGTAAAGCCACTTCCACCTAATACTGTTGTTGAAA
AAAATATCAACGAGCCAGAGGCCGTTGCTCAAGTTTTAAAGGCGCTTGTTCAGTCCGCGCGCAGTAAGACGAAAGACGCT
GCGGTTGCTGTTTCGGGATCGTCTGTGATTACTAAGTTGGTTGAAATGCCCGGTGATCTAAATGACGAGCAAATGGAGGC
TTATATCTCCACTGAGGCTGATCAATATATTCCCTACCCTCTTGAAGAGGTTGCTCTGGATTTTGATGTACAGGGGCCTT
CATCTAAAAACCCCGATCAAGTCGAAGTGTTGTTGGCTGCTTGTCGCAGTGAGAATGTCGAAACTCGCGTAGCGGTTCTA
GCCGAAGCAGGGCTTAATCCAAAAGTTGTTGATGTTGAAGCCTACACGATGGAGCGTGCTTTTGAGTTGATTCGAGAGCA
GCTTGAAGATCAGGATGAGCAAGTGGTCGCTGTGCTTGACATAGGTGCAACGATGACAACGCTCAGCGTTTTAGTTGATG
GCTCGACGATCTATACGCGTGAGCAGCTATTTGGCGGCAAGCAGTTAACAGAAGAAATTCAGCGACGCTATGGTTTATCT
GCCGAAGAGGCCGGGCTTGCCAAGAAGCAGGGGGGGCTTCCAGATGATTATGAGGGGGAGGTGTTGGAGCCGTTTAAAGA
TGCGGTTGTTCAGCAGGTGACGCGCTCGTTACAATTTTTCTTTTCTTCAAGTCAGTACAATGATGTTGATCACATTATTC
TCGCTGGTGGTGTAGCTGCTCTTGATGGACTGGCCGGTTTGATTGAGGAGAAGCTTGGAACGCCAGCTACTGTAGCTAAT
CCATTTGCGAATATGTCTATAGCTTCTCGTGTGAATTCAGCTGCGTTAGATGGCGATGCTCCTTCGCTAATGATTGCTGC
AGGCTTGGCTTTAAGGGGGTTTGAGTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

56.534

99.155

0.561
  comM Acinetobacter nosocomialis M2

56.534

99.155

0.561
  comM Acinetobacter baylyi ADP1

53.125

99.155

0.527
  pilM Legionella pneumophila strain ERS1305867

46.61

99.718

0.465

Multiple sequence alignment