Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB3239_RS21685 | Genome accession | NZ_CP166831 |
| Coordinates | 4163113..4163631 (-) | Length | 172 a.a. |
| NCBI ID | WP_003219228.1 | Uniprot ID | A0A063XE16 |
| Organism | Bacillus subtilis strain TE3T-UV25 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4115891..4163098 | 4163113..4163631 | flank | 15 |
Gene organization within MGE regions
Location: 4115891..4163631
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3239_RS21395 (AB3239_21395) | yybO | 4116306..4117616 (+) | 1311 | WP_014478548.1 | MFS transporter | - |
| AB3239_RS21400 (AB3239_21400) | - | 4117777..4118514 (+) | 738 | WP_021481086.1 | MerR family transcriptional regulator | - |
| AB3239_RS21405 (AB3239_21405) | - | 4118552..4119340 (-) | 789 | WP_032724980.1 | hypothetical protein | - |
| AB3239_RS21410 (AB3239_21410) | - | 4119436..4119720 (+) | 285 | Protein_4160 | pentapeptide repeat-containing protein | - |
| AB3239_RS21415 (AB3239_21415) | yybF | 4119753..4120967 (-) | 1215 | WP_370957106.1 | MFS transporter | - |
| AB3239_RS21420 (AB3239_21420) | yybE | 4121155..4122033 (+) | 879 | WP_161621085.1 | LysR family transcriptional regulator | - |
| AB3239_RS21425 (AB3239_21425) | yybD | 4122047..4122490 (+) | 444 | WP_021481090.1 | GNAT family N-acetyltransferase | - |
| AB3239_RS21430 (AB3239_21430) | yybC | 4122573..4123051 (+) | 479 | Protein_4164 | DUF2798 domain-containing protein | - |
| AB3239_RS21435 (AB3239_21435) | - | 4123076..4123218 (-) | 143 | Protein_4165 | LysR family transcriptional regulator | - |
| AB3239_RS21440 (AB3239_21440) | yybB | 4123226..4123888 (-) | 663 | WP_032724976.1 | MBL fold metallo-hydrolase | - |
| AB3239_RS21445 (AB3239_21445) | yybA | 4124018..4124470 (-) | 453 | WP_370957107.1 | MarR family transcriptional regulator | - |
| AB3239_RS21450 (AB3239_21450) | yyaT | 4124590..4125036 (+) | 447 | WP_032724974.1 | GNAT family N-acetyltransferase | - |
| AB3239_RS21455 (AB3239_21455) | yyaS | 4125033..4125635 (+) | 603 | WP_072173947.1 | YitT family protein | - |
| AB3239_RS21460 (AB3239_21460) | satA | 4125703..4126224 (-) | 522 | WP_167568405.1 | streptothricin N-acetyltransferase SatA | - |
| AB3239_RS21465 (AB3239_21465) | yyaQ | 4126622..4126978 (+) | 357 | WP_338731849.1 | MmcQ/YjbR family DNA-binding protein | - |
| AB3239_RS21470 (AB3239_21470) | yyaP | 4127139..4127705 (+) | 567 | WP_021481097.1 | dihydrofolate reductase family protein | - |
| AB3239_RS21475 (AB3239_21475) | - | 4127947..4128127 (+) | 181 | Protein_4173 | DUF255 domain-containing protein | - |
| AB3239_RS21480 (AB3239_21480) | - | 4128241..4128441 (-) | 201 | WP_072173949.1 | hypothetical protein | - |
| AB3239_RS21485 (AB3239_21485) | yyaN | 4128781..4129197 (+) | 417 | WP_010886646.1 | MerR family transcriptional regulator | - |
| AB3239_RS21490 (AB3239_21490) | yyaM | 4129194..4130111 (+) | 918 | WP_151869937.1 | DMT family transporter | - |
| AB3239_RS21495 (AB3239_21495) | - | 4130183..4130350 (+) | 168 | Protein_4177 | DUF255 domain-containing protein | - |
| AB3239_RS21500 (AB3239_21500) | - | 4130419..4132377 (-) | 1959 | WP_370957108.1 | NACHT domain-containing NTPase | - |
| AB3239_RS21505 (AB3239_21505) | - | 4132465..4133973 (+) | 1509 | WP_370957109.1 | recombinase family protein | - |
| AB3239_RS21510 (AB3239_21510) | - | 4134122..4134745 (-) | 624 | WP_370957110.1 | hypothetical protein | - |
| AB3239_RS21515 (AB3239_21515) | - | 4134829..4135002 (+) | 174 | WP_167560883.1 | hypothetical protein | - |
| AB3239_RS21520 (AB3239_21520) | - | 4135168..4135545 (-) | 378 | WP_187957475.1 | cystatin-like fold lipoprotein | - |
| AB3239_RS21525 (AB3239_21525) | - | 4135608..4136114 (-) | 507 | WP_370957111.1 | hypothetical protein | - |
| AB3239_RS21530 (AB3239_21530) | - | 4136129..4137118 (-) | 990 | WP_144482757.1 | bifunctional lytic transglycosylase/C40 family peptidase | - |
| AB3239_RS21535 (AB3239_21535) | - | 4137115..4139553 (-) | 2439 | WP_370957112.1 | CD3337/EF1877 family mobilome membrane protein | - |
| AB3239_RS21540 (AB3239_21540) | - | 4139557..4139883 (-) | 327 | WP_041904620.1 | YddF family protein | - |
| AB3239_RS21545 (AB3239_21545) | conE | 4139901..4142396 (-) | 2496 | WP_370957113.1 | VirB4-like ATPase ConE | - |
| AB3239_RS21550 (AB3239_21550) | - | 4142284..4142808 (-) | 525 | WP_370957114.1 | conjugal transfer protein | - |
| AB3239_RS21555 (AB3239_21555) | - | 4142821..4143069 (-) | 249 | WP_209283711.1 | hypothetical protein | - |
| AB3239_RS21560 (AB3239_21560) | - | 4143081..4144145 (-) | 1065 | WP_370957115.1 | conjugal transfer protein | - |
| AB3239_RS21565 (AB3239_21565) | - | 4144173..4144322 (-) | 150 | WP_370957116.1 | hypothetical protein | - |
| AB3239_RS21570 (AB3239_21570) | - | 4144340..4144618 (-) | 279 | WP_370957117.1 | hypothetical protein | - |
| AB3239_RS21575 (AB3239_21575) | - | 4144635..4144901 (-) | 267 | WP_326218744.1 | hypothetical protein | - |
| AB3239_RS21580 (AB3239_21580) | - | 4145032..4145886 (+) | 855 | WP_326218745.1 | hypothetical protein | - |
| AB3239_RS21585 (AB3239_21585) | nicK | 4146308..4147366 (-) | 1059 | WP_370957118.1 | DNA relaxase NicK | - |
| AB3239_RS21590 (AB3239_21590) | conQ | 4147359..4148801 (-) | 1443 | WP_328037839.1 | coupling conjugation protein ConQ | - |
| AB3239_RS21595 (AB3239_21595) | - | 4148838..4149215 (-) | 378 | WP_128473637.1 | YdcP family protein | - |
| AB3239_RS21600 (AB3239_21600) | - | 4149260..4149376 (-) | 117 | Protein_4198 | hypothetical protein | - |
| AB3239_RS21605 (AB3239_21605) | - | 4149582..4149842 (-) | 261 | WP_124073393.1 | hypothetical protein | - |
| AB3239_RS21610 (AB3239_21610) | - | 4149896..4150120 (-) | 225 | WP_370957469.1 | hypothetical protein | - |
| AB3239_RS21615 (AB3239_21615) | - | 4150153..4150332 (-) | 180 | WP_017418449.1 | hypothetical protein | - |
| AB3239_RS21620 (AB3239_21620) | - | 4150627..4151010 (+) | 384 | WP_370957119.1 | helix-turn-helix domain-containing protein | - |
| AB3239_RS21625 (AB3239_21625) | - | 4151007..4151537 (+) | 531 | WP_019716392.1 | ImmA/IrrE family metallo-endopeptidase | - |
| AB3239_RS21630 (AB3239_21630) | - | 4151651..4152847 (-) | 1197 | WP_370957120.1 | Rap family tetratricopeptide repeat protein | - |
| AB3239_RS21635 (AB3239_21635) | - | 4153143..4154459 (+) | 1317 | WP_370957121.1 | serine/threonine-protein kinase | - |
| AB3239_RS21640 (AB3239_21640) | - | 4154559..4155368 (+) | 810 | WP_370957122.1 | hypothetical protein | - |
| AB3239_RS21645 (AB3239_21645) | yyaL | 4155402..4157492 (+) | 2091 | Protein_4207 | thioredoxin domain-containing protein | - |
| AB3239_RS21650 (AB3239_21650) | yyaK | 4157489..4158388 (-) | 900 | WP_021481102.1 | CPBP family intramembrane glutamic endopeptidase | - |
| AB3239_RS21655 (AB3239_21655) | yyaJ | 4158615..4159970 (+) | 1356 | WP_370957123.1 | MFS transporter | - |
| AB3239_RS21660 (AB3239_21660) | maa | 4160004..4160558 (-) | 555 | WP_015250785.1 | sugar O-acetyltransferase | - |
| AB3239_RS21665 (AB3239_21665) | yyaH | 4160576..4160956 (-) | 381 | WP_003244460.1 | VOC family protein | - |
| AB3239_RS21670 (AB3239_21670) | ccpB | 4161012..4161947 (-) | 936 | WP_370957124.1 | transcriptional regulator CcpB | - |
| AB3239_RS21675 (AB3239_21675) | xth | 4162007..4162765 (-) | 759 | WP_141949356.1 | exodeoxyribonuclease III | - |
| AB3239_RS21680 (AB3239_21680) | rpsR | 4162830..4163069 (-) | 240 | WP_003219224.1 | 30S ribosomal protein S18 | - |
| AB3239_RS21685 (AB3239_21685) | ssbA | 4163113..4163631 (-) | 519 | WP_003219228.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18742.31 Da Isoelectric Point: 4.7621
>NTDB_id=1035570 AB3239_RS21685 WP_003219228.1 4163113..4163631(-) (ssbA) [Bacillus subtilis strain TE3T-UV25]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=1035570 AB3239_RS21685 WP_003219228.1 4163113..4163631(-) (ssbA) [Bacillus subtilis strain TE3T-UV25]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.192 |
100 |
0.599 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
61.628 |
0.395 |
| ssb | Glaesserella parasuis strain SC1401 |
35.519 |
100 |
0.378 |