Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QUE89_RS03100 Genome accession   NZ_AP028070
Coordinates   677647..678174 (+) Length   175 a.a.
NCBI ID   WP_041341488.1    Uniprot ID   W5YJI8
Organism   Marinobacter sp. LA51     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 672647..683174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE89_RS03085 rplQ 672718..673116 (+) 399 WP_041341481.1 50S ribosomal protein L17 -
  QUE89_RS03090 uvrA 673210..676032 (-) 2823 WP_286221784.1 excinuclease ABC subunit UvrA -
  QUE89_RS03095 - 676218..677588 (+) 1371 WP_286221785.1 MFS transporter -
  QUE89_RS03100 ssb 677647..678174 (+) 528 WP_041341488.1 single-stranded DNA-binding protein Machinery gene
  QUE89_RS03105 - 678374..679306 (+) 933 WP_286221786.1 biogenesis protein MshI -
  QUE89_RS03110 - 679303..679908 (+) 606 WP_286221787.1 PilN domain-containing protein -
  QUE89_RS03115 - 679908..680609 (+) 702 WP_286221788.1 MSHA biogenesis protein MshJ -
  QUE89_RS03120 - 680611..680958 (+) 348 WP_286221789.1 hypothetical protein -
  QUE89_RS03125 mshL 680976..682685 (+) 1710 WP_286221790.1 pilus (MSHA type) biogenesis protein MshL -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19308.37 Da        Isoelectric Point: 4.9464

>NTDB_id=103554 QUE89_RS03100 WP_041341488.1 677647..678174(+) (ssb) [Marinobacter sp. LA51]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPKTEWHRIVLFGKVAEVAGQYLRKGSKVYIE
GKLQTRKWTNKEGQDVYTTEVVVDINGQMQMLDSRGEGGMNQGAPAGRPQQSNYNAPAPQQNNNPPPQQQSGGYNQPSQG
SMPEPVDDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=103554 QUE89_RS03100 WP_041341488.1 677647..678174(+) (ssb) [Marinobacter sp. LA51]
ATGGCACGAGGCGTAAACAAAGTCATTCTTATCGGGAACCTTGGTCAGGATCCTGATACCCGTTATACCCCGAACGGTAA
TGCGGTGGTCAACCTGAACCTTGCCACTGACGAGAGCTACAAGGATCGTCAGACCGGACAAATGGTGCCAAAAACCGAGT
GGCACCGTATTGTGCTGTTCGGAAAAGTGGCCGAAGTGGCGGGGCAGTACCTGCGCAAAGGTTCCAAGGTCTACATCGAA
GGCAAGCTGCAAACCCGGAAGTGGACGAACAAGGAAGGCCAGGACGTCTACACCACCGAAGTAGTGGTGGACATCAATGG
CCAGATGCAGATGCTGGACAGCCGGGGTGAAGGCGGCATGAACCAGGGTGCACCGGCGGGGCGTCCGCAGCAGTCCAATT
ACAATGCACCGGCGCCGCAGCAGAACAACAACCCGCCGCCACAGCAGCAATCGGGTGGCTACAACCAGCCTTCTCAGGGA
AGCATGCCTGAGCCGGTGGACGACTTTGATGATGACATCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W5YJI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.044

100

0.583
  ssb Glaesserella parasuis strain SC1401

52.66

100

0.566
  ssb Neisseria gonorrhoeae MS11

44.382

100

0.451
  ssb Neisseria meningitidis MC58

44.382

100

0.451

Multiple sequence alignment