Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   QUF19_RS06535 Genome accession   NZ_AP028067
Coordinates   1447886..1448467 (+) Length   193 a.a.
NCBI ID   WP_017060401.1    Uniprot ID   A0A1B9QDI1
Organism   Vibrio sp. FE10     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1442886..1453467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF19_RS06515 panP 1443182..1444825 (-) 1644 WP_286297849.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  QUF19_RS06520 - 1444944..1445471 (-) 528 WP_102439048.1 hypothetical protein -
  QUF19_RS06525 - 1445647..1446552 (-) 906 WP_017111641.1 lysine exporter LysO family protein -
  QUF19_RS06530 - 1446608..1447528 (-) 921 WP_286297854.1 HDOD domain-containing protein -
  QUF19_RS06535 tfoX 1447886..1448467 (+) 582 WP_017060401.1 TfoX/Sxy family DNA transformation protein Regulator
  QUF19_RS06540 - 1448629..1449171 (-) 543 WP_017108221.1 hypothetical protein -
  QUF19_RS06545 - 1449380..1449877 (-) 498 WP_286297861.1 response regulator -
  QUF19_RS06550 - 1449870..1451813 (-) 1944 WP_286297864.1 ATP-binding protein -
  QUF19_RS06555 - 1451997..1453259 (+) 1263 WP_102439056.1 DUF945 family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22203.56 Da        Isoelectric Point: 8.7998

>NTDB_id=103511 QUF19_RS06535 WP_017060401.1 1447886..1448467(+) (tfoX) [Vibrio sp. FE10]
MTETAFINYVNQFGEHQKRSMFGGIGLFQNDAMFALLSEGCLFIRGGKSLDKKLTDLDCEKYRHVKKQTTATVNYYDITD
LFTCEHPELDSIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGAPEVFNKVREAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=103511 QUF19_RS06535 WP_017060401.1 1447886..1448467(+) (tfoX) [Vibrio sp. FE10]
ATGACCGAGACAGCATTTATTAATTACGTGAATCAATTTGGTGAGCATCAAAAACGTTCTATGTTCGGAGGTATTGGCCT
CTTTCAAAATGACGCTATGTTCGCTTTGTTGAGTGAAGGTTGTTTATTTATTAGAGGTGGCAAGTCATTAGATAAAAAAC
TGACGGATCTTGATTGTGAAAAGTATCGTCATGTGAAAAAGCAGACAACAGCAACCGTAAATTACTACGATATTACGGAT
CTGTTTACATGTGAACATCCTGAATTGGATAGCATTATTCGTACTTCAATCGATAATTCAATTCAACAACGTAGCTTCAA
AAAATCATCCGCTAGCCGTAGATTGAGAGATCTTCCAAACATGCAACTCACATTAGAGCGCATGGTGAAAAAAGCAGGTG
TTGATGATGTTTCAATGTTTATGCAGTTAGGCGCGCCTGAAGTGTTTAATAAGGTTCGCGAAGCGTACGGCAATGATGTT
GACCTAAAACTACTTTGGAAATTTGCGGGCGCAATTGATGGTATCCACTGGAAACTATTGCAAGAACCACGCAAGCAGCA
ATTATTGAAGAGCTGCCACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-98)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9QDI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

74.093

100

0.741
  tfoX Vibrio cholerae strain A1552

74.093

100

0.741
  tfoX Vibrio campbellii strain DS40M4

70.466

100

0.705
  tfoX Vibrio parahaemolyticus RIMD 2210633

70.466

100

0.705
  tfoX Aliivibrio fischeri ES114

57.895

98.446

0.57

Multiple sequence alignment