Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACA027_RS22030 Genome accession   NZ_CP166730
Coordinates   4985377..4985943 (+) Length   188 a.a.
NCBI ID   WP_370680309.1    Uniprot ID   -
Organism   Comamonas sp. GB3 AK4-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4980377..4990943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA027_RS22020 (ACA027_22020) uvrA 4980579..4983599 (-) 3021 WP_370682657.1 excinuclease ABC subunit UvrA -
  ACA027_RS22025 (ACA027_22025) - 4983905..4985083 (+) 1179 WP_370682658.1 MFS transporter -
  ACA027_RS22030 (ACA027_22030) ssb 4985377..4985943 (+) 567 WP_370680309.1 single-stranded DNA-binding protein Machinery gene
  ACA027_RS22035 (ACA027_22035) - 4986510..4987313 (+) 804 WP_370680310.1 hypothetical protein -
  ACA027_RS22040 (ACA027_22040) - 4987310..4988650 (-) 1341 WP_370680311.1 type II toxin-antitoxin system HipA family toxin -
  ACA027_RS22045 (ACA027_22045) - 4988659..4988952 (-) 294 WP_370680312.1 helix-turn-helix domain-containing protein -
  ACA027_RS22050 (ACA027_22050) - 4989314..4990675 (+) 1362 WP_370680313.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20111.31 Da        Isoelectric Point: 5.9505

>NTDB_id=1035063 ACA027_RS22030 WP_370680309.1 4985377..4985943(+) (ssb) [Comamonas sp. GB3 AK4-5]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDKWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SIRTRKWTDQAGQERYSTEIRADTMQMLGARQGMGGGQSQGYGDDAGYGDNGGGGYDAAPRRPAAAPAQRPAAAPRMAPP
APAAAAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1035063 ACA027_RS22030 WP_370680309.1 4985377..4985943(+) (ssb) [Comamonas sp. GB3 AK4-5]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGGCGCGACCCCGAAATGCGCACCTTCCCCAGTGGGGACCA
AGTGGCCAACGTCACCATCGCCACCACCGACAAATGGCGTGACAAAAACACTGGCGAAAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTGTTCAATGGCCGCCTGGCCGAGATCGTGGGCCAGTACCTGCGCAAGGGCTCCCAGGTGTATGTGGAAGGC
TCCATCCGCACCCGCAAGTGGACCGACCAGGCTGGCCAGGAGCGCTACAGCACCGAAATCCGCGCCGACACCATGCAGAT
GCTGGGCGCCCGCCAAGGCATGGGCGGCGGCCAGAGCCAGGGTTATGGCGATGACGCCGGCTACGGCGACAACGGTGGTG
GTGGCTATGACGCGGCCCCGCGCCGCCCGGCCGCAGCCCCTGCACAACGCCCCGCTGCCGCACCGCGCATGGCCCCGCCC
GCACCGGCAGCCGCCGCACCCATGGCCCCTCCGCCCCAGCGCGCTGCTTCGGGCTTTGACGATATGGATGACGACATCCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.78

100

0.532
  ssb Vibrio cholerae strain A1552

49.485

100

0.511
  ssb Neisseria gonorrhoeae MS11

44.086

98.936

0.436
  ssb Neisseria meningitidis MC58

43.548

98.936

0.431

Multiple sequence alignment