Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   DG169_RS11170 Genome accession   NZ_LT992492
Coordinates   2381990..2382673 (+) Length   227 a.a.
NCBI ID   WP_001082329.1    Uniprot ID   -
Organism   Vibrio cholerae strain 4295STDY6534248     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2376990..2387673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG169_RS11145 (SAMEA4374368_02178) - 2377926..2378942 (-) 1017 WP_000862954.1 YqaJ viral recombinase family protein -
  DG169_RS19800 (SAMEA4374368_02179) - 2379003..2379146 (-) 144 WP_000167275.1 hypothetical protein -
  DG169_RS11150 (SAMEA4374368_02180) bet 2379228..2380046 (-) 819 WP_000414661.1 phage recombination protein Bet -
  DG169_RS11155 (SAMEA4374368_02181) - 2380126..2380545 (-) 420 WP_000795987.1 single-stranded DNA-binding protein -
  DG169_RS11160 (SAMEA4374368_02182) - 2380561..2380887 (-) 327 WP_000455721.1 hypothetical protein -
  DG169_RS11165 (SAMEA4374368_02183) - 2381255..2381857 (+) 603 WP_000035786.1 hypothetical protein -
  DG169_RS11170 (SAMEA4374368_02184) ideA 2381990..2382673 (+) 684 WP_001082329.1 endonuclease Regulator
  DG169_RS11175 (SAMEA4374368_02185) - 2382786..2383850 (+) 1065 WP_000852158.1 hypothetical protein -
  DG169_RS11180 (SAMEA4374368_02186) - 2383850..2384935 (+) 1086 WP_000678781.1 hypothetical protein -
  DG169_RS11185 (SAMEA4374368_02187) - 2384942..2385622 (+) 681 WP_000838013.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26445.53 Da        Isoelectric Point: 7.5669

>NTDB_id=1034993 DG169_RS11170 WP_001082329.1 2381990..2382673(+) (ideA) [Vibrio cholerae strain 4295STDY6534248]
MNRTNLLVNFLIALLAIPAFAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGDRLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNERRSYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSKQQTQLFEAWSRMDPVDEWEKIRDLKIRSVQGNSNCHVTQSC

Nucleotide


Download         Length: 684 bp        

>NTDB_id=1034993 DG169_RS11170 WP_001082329.1 2381990..2382673(+) (ideA) [Vibrio cholerae strain 4295STDY6534248]
ATGAATAGAACTAATTTGCTCGTTAACTTCTTAATAGCGTTGCTCGCTATCCCTGCATTTGCAGAACACCCAACATCGTT
CAGCCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGTGGAGATCGCTTAGAGTGGGAGCAC
GTTGTCTCAGCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAATGGTGGTCGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCTGTAGGAGAGCTCAATGGGGATAGGTCAAATTTTC
GATTTGGCATGATTCCGAATGAACGAAGATCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGTCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATCTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAAGCA
ACAAACTCAGCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAAAAAATACGTGATTTGAAGATTAGAA
GTGTACAAGGAAACAGTAATTGCCATGTTACACAAAGTTGTTAA

Domains

Predicted by InterProScan.

Endonuclease I (Endonuclease_1)

(41-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

93.392

100

0.934
  dns Vibrio parahaemolyticus RIMD 2210633

53.947

100

0.542
  dns Aliivibrio fischeri ES114

52.609

100

0.533
  dns Vibrio cholerae strain A1552

52.444

99.119

0.52
  dns Campylobacter jejuni RM1221

39.545

96.916

0.383