Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HUW69_RS04950 Genome accession   NZ_LT992490
Coordinates   1069171..1069482 (+) Length   103 a.a.
NCBI ID   WP_084997841.1    Uniprot ID   -
Organism   Vibrio cholerae strain 4295STDY6534200     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1064171..1074482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW69_RS04935 (SAMEA4374365_01002) lon 1064208..1066568 (+) 2361 WP_001047611.1 endopeptidase La -
  HUW69_RS04940 (SAMEA4374365_01003) - 1066752..1067024 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  HUW69_RS04945 (SAMEA4374365_01004) ppiD 1067177..1069036 (+) 1860 WP_000969315.1 peptidylprolyl isomerase -
  HUW69_RS04950 (SAMEA4374365_01005) comEA 1069171..1069482 (+) 312 WP_084997841.1 ComEA family DNA-binding protein Machinery gene
  HUW69_RS04955 (SAMEA4374365_01006) cmk 1069665..1070342 (+) 678 WP_000094750.1 (d)CMP kinase -
  HUW69_RS04960 (SAMEA4374365_01007) rpsA 1070451..1072121 (+) 1671 WP_000140316.1 30S ribosomal protein S1 -
  HUW69_RS04965 (SAMEA4374365_01008) ihfB 1072411..1072689 (+) 279 WP_000167341.1 integration host factor subunit beta -
  HUW69_RS04970 (SAMEA4374365_01009) - 1072828..1073109 (+) 282 WP_000691487.1 LapA family protein -
  HUW69_RS04975 (SAMEA4374365_01010) lapB 1073121..1074290 (+) 1170 WP_000889965.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10906.68 Da        Isoelectric Point: 5.0506

>NTDB_id=1034879 HUW69_RS04950 WP_084997841.1 1069171..1069482(+) (comEA) [Vibrio cholerae strain 4295STDY6534200]
MQIKTKVATLLLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFSHI
DDLTNVKGIGEATVRNNATRILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1034879 HUW69_RS04950 WP_084997841.1 1069171..1069482(+) (comEA) [Vibrio cholerae strain 4295STDY6534200]
ATGCAAATCAAAACCAAAGTAGCGACATTACTTCTTTCTCTCTGTCTGCCGACATTACCGTTACTGGCCAATGCCGAAGA
AACGGCACCTGCTGCACAGGTAGAAGAAGGTATTGTTATCACCGTCAACATTAACACCGCCTCGGCAGAAGAACTGGCGA
CGTTACTCAAAGGTATCGGGCTTAAGAAAGCTCAGGCGATTGTCGATTATCGAGAAGCCAACGGTCCTTTTTCTCATATC
GATGATTTGACGAATGTAAAAGGGATTGGTGAAGCTACGGTGCGCAACAACGCCACGAGGATCTTGTTGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

95.146

100

0.951
  comEA Vibrio cholerae strain A1552

95.146

100

0.951
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

59.574

91.262

0.544

Multiple sequence alignment