Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB9V60_RS22390 | Genome accession | NZ_CP166624 |
| Coordinates | 5172379..5172945 (-) | Length | 188 a.a. |
| NCBI ID | WP_003317093.1 | Uniprot ID | A0A0P9GWC5 |
| Organism | Pseudomonas syringae pv. atrofaciens strain GM 2231 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5167379..5177945
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB9V60_RS22370 (AB9V60_22375) | - | 5167751..5169319 (-) | 1569 | WP_141251820.1 | asparagine synthase-related protein | - |
| AB9V60_RS22375 (AB9V60_22380) | - | 5169410..5169643 (-) | 234 | WP_374057192.1 | hypothetical protein | - |
| AB9V60_RS22380 (AB9V60_22385) | - | 5169798..5171555 (+) | 1758 | WP_017278730.1 | ABC transporter ATP-binding protein | - |
| AB9V60_RS22385 (AB9V60_22390) | - | 5171686..5172129 (-) | 444 | WP_017278731.1 | hypothetical protein | - |
| AB9V60_RS22390 (AB9V60_22395) | ssb | 5172379..5172945 (-) | 567 | WP_003317093.1 | single-stranded DNA-binding protein | Machinery gene |
| AB9V60_RS22395 (AB9V60_22400) | - | 5172955..5174349 (-) | 1395 | WP_003426593.1 | MFS transporter | - |
| AB9V60_RS22400 (AB9V60_22405) | uvrA | 5174479..5177313 (+) | 2835 | WP_017278732.1 | excinuclease ABC subunit UvrA | - |
| AB9V60_RS22405 (AB9V60_22410) | bfr | 5177408..5177872 (-) | 465 | WP_003317095.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20917.05 Da Isoelectric Point: 5.9404
>NTDB_id=1034858 AB9V60_RS22390 WP_003317093.1 5172379..5172945(-) (ssb) [Pseudomonas syringae pv. atrofaciens strain GM 2231]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 567 bp
>NTDB_id=1034858 AB9V60_RS22390 WP_003317093.1 5172379..5172945(-) (ssb) [Pseudomonas syringae pv. atrofaciens strain GM 2231]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACGACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCTC
GTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAATCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCC
GTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACGACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCTC
GTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAATCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCC
GTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.208 |
100 |
0.564 |
| ssb | Glaesserella parasuis strain SC1401 |
47.09 |
100 |
0.473 |
| ssb | Neisseria meningitidis MC58 |
44.92 |
99.468 |
0.447 |
| ssb | Neisseria gonorrhoeae MS11 |
44.92 |
99.468 |
0.447 |