Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AB9V60_RS03290 Genome accession   NZ_CP166624
Coordinates   740837..742174 (-) Length   445 a.a.
NCBI ID   WP_017279844.1    Uniprot ID   A0AAD0MWD9
Organism   Pseudomonas syringae pv. atrofaciens strain GM 2231     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 735837..747174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9V60_RS03275 (AB9V60_03275) - 735975..739178 (+) 3204 WP_370683299.1 pilus assembly protein -
  AB9V60_RS03280 (AB9V60_03280) - 739190..739597 (+) 408 WP_017279558.1 type IV pilin protein -
  AB9V60_RS03285 (AB9V60_03285) thiO 739623..740726 (+) 1104 WP_122242554.1 glycine oxidase ThiO -
  AB9V60_RS03290 (AB9V60_03290) pilR 740837..742174 (-) 1338 WP_017279844.1 sigma-54 dependent transcriptional regulator Regulator
  AB9V60_RS03295 (AB9V60_03295) pilS 742177..743769 (-) 1593 WP_024692602.1 PAS domain-containing sensor histidine kinase Regulator
  AB9V60_RS03300 (AB9V60_03300) - 743759..743998 (-) 240 WP_032607804.1 PP0621 family protein -
  AB9V60_RS03305 (AB9V60_03305) - 744118..745140 (-) 1023 WP_003344571.1 outer membrane protein assembly factor BamD -
  AB9V60_RS03310 (AB9V60_03310) rluD 745290..746252 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB9V60_RS03315 (AB9V60_03315) pgeF 746249..746977 (+) 729 WP_017279845.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49653.60 Da        Isoelectric Point: 6.2986

>NTDB_id=1034840 AB9V60_RS03290 WP_017279844.1 740837..742174(-) (pilR) [Pseudomonas syringae pv. atrofaciens strain GM 2231]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAGSV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESVSPQEGDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1034840 AB9V60_RS03290 WP_017279844.1 740837..742174(-) (pilR) [Pseudomonas syringae pv. atrofaciens strain GM 2231]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGCAGTGCACGTAACGTTGCCGAAGCCCATGACTGGCTGGCCCGTGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCTGATGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCACACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
CGACCTCGGCAGGCTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGGAGCATCGACAATC
GACTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAATCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGCGTCTTATCCACGAGCAGGGCCCGCGCATCGACAAACCTTT
CATACCGGTGAATTGCGGCGCCATTCCTTCCGAGCTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAAGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAGTCCATTCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAATCTGAATGCGGAGGTCGCGGCAGGTCGGTTCCGTCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCTCATTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCGGGCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCCGTCAGCCCTCAGGAGGGCGACGGCCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCGCTTGAAGAAACCCGCTGGAACCGCACCGCTGCAGCAGAAAG
GCTCAGCTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.201

99.551

0.769
  pilR Acinetobacter baumannii strain A118

48.394

100

0.508
  luxO Vibrio cholerae strain A1552

37.613

99.775

0.375

Multiple sequence alignment