Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ABK044_RS01525 Genome accession   NZ_CP166581
Coordinates   345029..346087 (-) Length   352 a.a.
NCBI ID   WP_005410860.1    Uniprot ID   A0A854DVP1
Organism   Stenotrophomonas maltophilia strain 9605     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340029..351087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK044_RS01505 (ABK044_01505) - 340949..342916 (-) 1968 WP_100443671.1 type IV pilus secretin PilQ -
  ABK044_RS01510 (ABK044_01510) - 342938..343441 (-) 504 WP_043035665.1 pilus assembly protein PilP -
  ABK044_RS01515 (ABK044_01515) - 343468..344124 (-) 657 WP_005410857.1 type 4a pilus biogenesis protein PilO -
  ABK044_RS01520 (ABK044_01520) - 344121..345029 (-) 909 WP_049432643.1 PilN domain-containing protein -
  ABK044_RS01525 (ABK044_01525) pilM 345029..346087 (-) 1059 WP_005410860.1 pilus assembly protein PilM Machinery gene
  ABK044_RS01530 (ABK044_01530) - 346307..348730 (+) 2424 WP_049432636.1 penicillin-binding protein 1A -
  ABK044_RS01535 (ABK044_01535) - 348927..349571 (+) 645 WP_370671952.1 hypothetical protein -
  ABK044_RS01540 (ABK044_01540) - 349695..350444 (-) 750 WP_049432630.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37739.38 Da        Isoelectric Point: 4.4047

>NTDB_id=1034820 ABK044_RS01525 WP_005410860.1 345029..346087(-) (pilM) [Stenotrophomonas maltophilia strain 9605]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1034820 ABK044_RS01525 WP_005410860.1 345029..346087(-) (pilM) [Stenotrophomonas maltophilia strain 9605]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGCGGCAATCGTTTCCGTGTGGAACACTACGCTGTGGAACCTCTTCCGCCGAATGCGGTGGTGGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGTGCGATGAACCGTTCAGGCAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCCGGGTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCTGAGAACGTGGAACTGCGCCAGTCCGCGCTGGAACTGGGT
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTACGCCCTGGTCGCCAGCGAGCTGCCGGT
ATCGATCGACGGCGTGGTCGCGCTGGTCGACATCGGCGCCACCATGACCACCCTCAATGTCCTGCGCGGTGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTACGGCCTGAGCTACGAGGAA
GCCGGTCTGGCCAAGCGCCAGGGCGGGTTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAGGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGTGTCGACCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTGGGTGGCCTGCCGGAGATGGTTGAAGAACAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCA
CAGATGACCCTGGGCCCGAAGGTGAACGCACATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854DVP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.863

99.716

0.477

Multiple sequence alignment