Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   DG247_RS08640 Genome accession   NZ_LT992486
Coordinates   1831740..1832327 (-) Length   195 a.a.
NCBI ID   WP_001005366.1    Uniprot ID   -
Organism   Vibrio cholerae strain 4295STDY6534216     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1826740..1837327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG247_RS08620 (SAMEA4374366_01680) - 1826968..1828233 (-) 1266 WP_000835928.1 YdgA family protein -
  DG247_RS08625 (SAMEA4374366_01681) - 1828456..1830411 (+) 1956 WP_001082992.1 ATP-binding protein -
  DG247_RS08630 (SAMEA4374366_01682) - 1830408..1830905 (+) 498 WP_001031964.1 response regulator -
  DG247_RS08635 (SAMEA4374366_01683) - 1831096..1831644 (+) 549 WP_001232641.1 hypothetical protein -
  DG247_RS08640 (SAMEA4374366_01684) tfoX 1831740..1832327 (-) 588 WP_001005366.1 TfoX/Sxy family DNA transformation protein Regulator
  DG247_RS08645 (SAMEA4374366_01685) - 1832705..1833625 (+) 921 WP_000019000.1 HDOD domain-containing protein -
  DG247_RS08650 (SAMEA4374366_01686) - 1833646..1834551 (+) 906 WP_000948497.1 lysine exporter LysO family protein -
  DG247_RS08655 (SAMEA4374366_01687) - 1834740..1835249 (+) 510 WP_000826868.1 hypothetical protein -
  DG247_RS08660 (SAMEA4374366_01688) panP 1835359..1837005 (+) 1647 WP_000253201.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22816.03 Da        Isoelectric Point: 6.9718

>NTDB_id=1034720 DG247_RS08640 WP_001005366.1 1831740..1832327(-) (tfoX) [Vibrio cholerae strain 4295STDY6534216]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1034720 DG247_RS08640 WP_001005366.1 1831740..1832327(-) (tfoX) [Vibrio cholerae strain 4295STDY6534216]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATTATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGTATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGCCTCGGTGCGCCAGAAGTGTTTAATAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCGGGTGCGATTGAAGGCATTCACTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGTCAGCAGCGTTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.