Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4X18_RS05500 Genome accession   NZ_CP166251
Coordinates   854693..855169 (+) Length   158 a.a.
NCBI ID   WP_370402669.1    Uniprot ID   -
Organism   Sulfitobacter sp. JB4-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 849693..860169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4X18_RS05485 (AB4X18_05485) - 851053..853143 (+) 2091 WP_370401537.1 dipeptide ABC transporter ATP-binding protein -
  AB4X18_RS05490 (AB4X18_05490) - 853198..853710 (-) 513 WP_370401538.1 hypothetical protein -
  AB4X18_RS05495 (AB4X18_05495) - 853870..854466 (-) 597 WP_370401539.1 lytic transglycosylase domain-containing protein -
  AB4X18_RS05500 (AB4X18_05500) ssb 854693..855169 (+) 477 WP_370402669.1 single-stranded DNA-binding protein Machinery gene
  AB4X18_RS05505 (AB4X18_05505) - 855176..855601 (+) 426 WP_370401540.1 GNAT family N-acetyltransferase -
  AB4X18_RS05510 (AB4X18_05510) aroB 855598..856713 (-) 1116 WP_370401541.1 3-dehydroquinate synthase -
  AB4X18_RS05515 (AB4X18_05515) - 856706..857301 (-) 596 Protein_863 shikimate kinase -
  AB4X18_RS05520 (AB4X18_05520) - 857382..857531 (+) 150 WP_370401542.1 hypothetical protein -
  AB4X18_RS05525 (AB4X18_05525) - 857535..857852 (+) 318 WP_370401543.1 hypothetical protein -
  AB4X18_RS05530 (AB4X18_05530) - 858010..859104 (+) 1095 WP_370401544.1 hypothetical protein -
  AB4X18_RS05535 (AB4X18_05535) - 859101..860069 (+) 969 WP_370402670.1 tyrosine recombinase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17000.44 Da        Isoelectric Point: 4.8333

>NTDB_id=1033988 AB4X18_RS05500 WP_370402669.1 854693..855169(+) (ssb) [Sulfitobacter sp. JB4-11]
MILIGNLGRDPEVRSFQNGGKVCNLRIATSENWKDRNTGERREKTEWHSVAIFNEGLVRIAEQYLRKGSKVYIEGQLETR
KWQDQSGQDRYSTEVVLRNYGGTLTMLDGRDGGGGSGGGGGYGGGGQDQGYDSGGGYDSGPSQGGGGGSRDLDDEIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1033988 AB4X18_RS05500 WP_370402669.1 854693..855169(+) (ssb) [Sulfitobacter sp. JB4-11]
GTGATCCTTATCGGCAATCTGGGGCGCGATCCCGAAGTGCGGTCGTTCCAGAACGGGGGCAAGGTGTGCAACCTGCGCAT
TGCCACGTCCGAGAACTGGAAAGACCGCAACACCGGGGAGCGGCGCGAAAAGACCGAATGGCATTCCGTGGCGATCTTCA
ATGAAGGGCTGGTGCGGATTGCGGAGCAGTATCTGCGCAAGGGGTCGAAGGTGTATATCGAAGGCCAGCTTGAAACCCGC
AAATGGCAGGATCAGTCCGGTCAGGACCGCTACAGCACCGAGGTGGTATTGCGCAACTATGGCGGCACGCTGACCATGCT
GGATGGCCGTGATGGCGGCGGCGGCAGCGGTGGTGGCGGCGGTTACGGCGGCGGCGGCCAGGACCAAGGGTACGACAGCG
GCGGCGGGTATGACAGTGGCCCCAGCCAGGGTGGCGGTGGCGGATCGCGCGACCTGGACGATGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.176

100

0.551
  ssb Glaesserella parasuis strain SC1401

45.251

100

0.513
  ssb Neisseria meningitidis MC58

39.429

100

0.437
  ssb Neisseria gonorrhoeae MS11

39.429

100

0.437

Multiple sequence alignment