Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB8599_RS14100 Genome accession   NZ_CP166194
Coordinates   3163070..3163591 (-) Length   173 a.a.
NCBI ID   WP_407331527.1    Uniprot ID   -
Organism   Enterovibrio sp. 27052020O     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3158070..3168591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8599_RS14090 (AB8599_14095) - 3158188..3158751 (-) 564 WP_407331524.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  AB8599_RS14095 (AB8599_14100) - 3159301..3162669 (+) 3369 WP_407331526.1 Ig-like domain-containing protein -
  AB8599_RS14100 (AB8599_14105) ssb 3163070..3163591 (-) 522 WP_407331527.1 single-stranded DNA-binding protein Machinery gene
  AB8599_RS14105 (AB8599_14110) - 3163991..3164668 (+) 678 WP_407331528.1 LuxR C-terminal-related transcriptional regulator -
  AB8599_RS14110 (AB8599_14115) - 3164920..3165537 (+) 618 WP_407331529.1 calcium-binding protein -
  AB8599_RS14115 (AB8599_14120) - 3165986..3166603 (+) 618 WP_407331530.1 calcium-binding protein -
  AB8599_RS14120 (AB8599_14125) - 3166928..3167545 (+) 618 WP_407331531.1 calcium-binding protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19422.55 Da        Isoelectric Point: 5.2797

>NTDB_id=1033645 AB8599_RS14100 WP_407331527.1 3163070..3163591(-) (ssb) [Enterovibrio sp. 27052020O]
MASRGVNKVILIGNLGNDPEVRYLPNGGAVANLTVATSETWRDKSTGENKEMTEWHRVVMYRRLAEIAGEYLKKGSKVYL
EGRLQTRKWQGQDGQDRYTTEIVANEMQMLDSRAGGGMGQGQPAQQNPQQGNWGQPQQPAYQQPAQQKAPQQAPQQAPQQ
YNEMPDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1033645 AB8599_RS14100 WP_407331527.1 3163070..3163591(-) (ssb) [Enterovibrio sp. 27052020O]
ATGGCCAGCCGTGGTGTAAACAAAGTAATTTTGATTGGCAACTTGGGCAACGATCCTGAAGTTCGCTATCTGCCAAATGG
CGGTGCGGTTGCCAATCTGACTGTTGCGACCTCAGAAACGTGGCGCGACAAGAGCACTGGTGAAAATAAAGAAATGACCG
AATGGCACCGTGTGGTGATGTACCGTCGTTTAGCTGAAATCGCTGGTGAGTATCTGAAAAAAGGGTCAAAAGTGTATTTG
GAAGGCCGTTTGCAAACGCGCAAATGGCAAGGCCAAGACGGTCAAGACCGTTACACAACTGAGATTGTTGCGAACGAAAT
GCAGATGCTAGACAGCCGTGCCGGTGGTGGCATGGGTCAAGGTCAGCCTGCGCAACAAAACCCTCAGCAAGGCAATTGGG
GACAGCCGCAGCAGCCCGCGTATCAGCAGCCTGCGCAACAAAAAGCCCCTCAGCAGGCTCCGCAACAGGCGCCTCAGCAA
TACAACGAAATGCCTGATTTTGATGACGATATTCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.399

100

0.734
  ssb Glaesserella parasuis strain SC1401

55.026

100

0.601
  ssb Neisseria meningitidis MC58

55.367

100

0.566
  ssb Neisseria gonorrhoeae MS11

55.367

100

0.566

Multiple sequence alignment