Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   AB8599_RS08795 Genome accession   NZ_CP166194
Coordinates   2030602..2031186 (-) Length   194 a.a.
NCBI ID   WP_407330534.1    Uniprot ID   -
Organism   Enterovibrio sp. 27052020O     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2025602..2036186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8599_RS08770 (AB8599_08775) - 2025683..2027635 (+) 1953 WP_407330529.1 ATP-binding protein -
  AB8599_RS08775 (AB8599_08780) - 2027636..2028136 (+) 501 WP_407330531.1 response regulator -
  AB8599_RS08780 (AB8599_08785) - 2028327..2028884 (+) 558 WP_407330532.1 outer membrane beta-barrel protein -
  AB8599_RS08785 (AB8599_08790) - 2028981..2029454 (-) 474 WP_407330533.1 TetR/AcrR family transcriptional regulator -
  AB8599_RS08790 (AB8599_08795) dsdC 2029533..2030465 (-) 933 WP_407333201.1 DNA-binding transcriptional regulator DsdC -
  AB8599_RS08795 (AB8599_08800) tfoX 2030602..2031186 (-) 585 WP_407330534.1 TfoX/Sxy family DNA transformation protein Regulator
  AB8599_RS08800 (AB8599_08805) - 2031635..2032555 (+) 921 WP_407330535.1 HDOD domain-containing protein -
  AB8599_RS08805 (AB8599_08810) - 2032648..2033547 (+) 900 WP_407330536.1 lysine exporter LysO family protein -
  AB8599_RS08810 (AB8599_08815) ptsG 2033640..2035073 (-) 1434 WP_407330537.1 PTS glucose transporter subunit IIBC -
  AB8599_RS08815 (AB8599_08820) - 2035840..2036160 (+) 321 WP_407330538.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22047.35 Da        Isoelectric Point: 6.2684

>NTDB_id=1033631 AB8599_RS08795 WP_407330534.1 2030602..2031186(-) (tfoX) [Enterovibrio sp. 27052020O]
MLEVKSGFVEYLSQFGETEKRSMFGGTGFFVSGAMFALVKEARIYLRGGADLTDALLAKECKKFVHVKKSSTAIVNYYDI
TDLYDAEDTGLDEMVKKSVVNSVAEKEYRDSKLNKRLRDLPNLRLTIERMLKKAGIEDVDTFFSMSPEELFRKVQEAHGY
DVDIKLLWMFAGAQTGVHYTLLSEETKQNLLRAV

Nucleotide


Download         Length: 585 bp        

>NTDB_id=1033631 AB8599_RS08795 WP_407330534.1 2030602..2031186(-) (tfoX) [Enterovibrio sp. 27052020O]
GTGCTTGAAGTTAAAAGTGGCTTTGTAGAGTACTTATCTCAGTTCGGCGAAACAGAGAAACGTTCAATGTTTGGCGGAAC
CGGTTTTTTTGTGAGCGGTGCAATGTTTGCATTGGTGAAGGAAGCGCGAATTTACTTACGTGGCGGCGCAGATTTAACAG
ATGCGTTGTTGGCGAAAGAGTGTAAAAAGTTTGTCCATGTGAAAAAGAGCTCAACCGCGATTGTTAATTACTACGACATC
ACGGATCTCTATGACGCGGAAGATACAGGTTTAGACGAGATGGTAAAAAAGTCCGTAGTGAACTCTGTCGCAGAGAAAGA
ATACCGCGATTCCAAGCTCAACAAGCGACTTCGTGATTTACCGAATCTGCGTTTAACCATTGAAAGAATGCTAAAAAAAG
CAGGGATAGAAGATGTTGATACTTTCTTCTCAATGAGCCCTGAAGAATTGTTCCGAAAAGTGCAGGAAGCACACGGATAC
GATGTTGATATCAAGCTGCTGTGGATGTTTGCCGGTGCTCAAACGGGCGTTCATTACACCTTGCTAAGTGAAGAGACAAA
ACAAAACCTTCTTCGCGCAGTGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-193)

TfoX N-terminal domain (TfoX_N)

(10-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

53.514

95.361

0.51
  tfoX Vibrio parahaemolyticus RIMD 2210633

53.226

95.876

0.51
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

52.406

96.392

0.505
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

52.406

96.392

0.505
  tfoX Vibrio cholerae strain A1552

52.406

96.392

0.505
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

52.406

96.392

0.505
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

52.406

96.392

0.505
  tfoX Aliivibrio fischeri ES114

46.907

100

0.469

Multiple sequence alignment