Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AB8808_RS13750 Genome accession   NZ_CP166101
Coordinates   3280510..3281568 (+) Length   352 a.a.
NCBI ID   WP_369926499.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 2632     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3275510..3286568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8808_RS13740 (AB8808_13730) - 3277035..3277661 (-) 627 WP_369926496.1 hypothetical protein -
  AB8808_RS13745 (AB8808_13735) - 3277700..3280276 (-) 2577 WP_369926497.1 penicillin-binding protein 1A -
  AB8808_RS13750 (AB8808_13740) pilM 3280510..3281568 (+) 1059 WP_369926499.1 pilus assembly protein PilM Machinery gene
  AB8808_RS13755 (AB8808_13745) - 3281568..3282332 (+) 765 WP_369926501.1 PilN domain-containing protein -
  AB8808_RS13760 (AB8808_13750) - 3282329..3282979 (+) 651 WP_036137887.1 type 4a pilus biogenesis protein PilO -
  AB8808_RS13765 (AB8808_13755) - 3282979..3283506 (+) 528 WP_369926503.1 pilus assembly protein PilP -
  AB8808_RS13770 (AB8808_13760) pilQ 3283526..3285805 (+) 2280 WP_369926505.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37926.54 Da        Isoelectric Point: 4.5245

>NTDB_id=1033421 AB8808_RS13750 WP_369926499.1 3280510..3281568(+) (pilM) [Xanthomonas sp. NCPPB 2632]
MGLFTPKAAPLIGVDISSTAVKLLQLSQAGGRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRALARSGSKLKHAAAA
VAGSAVITRIIPMSADLSEDDLEGQIQVEANQYIPYPIEEVSLDFEVMGPVRDNPEMNNVLLAASRTENVDMRIAALDLG
GLTARVVDVEAFAMENAFGMVADQLAVSRDALVAVVDIGATMTTLAVLKNQRTIYSREQVFGGKQLTDEIMRRYGLSYEE
AGRAKRKGGLPESYEMEALEPFKESLVQQVSRLLQFFFAGSEYSRVDQVVLAGGCASIDGITELLEQQLGVPCVVANPLA
RMALSNRVQAQTLAQDAPALMIAVGLAMRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1033421 AB8808_RS13750 WP_369926499.1 3280510..3281568(+) (pilM) [Xanthomonas sp. NCPPB 2632]
GTGGGGCTCTTTACACCCAAAGCGGCGCCGCTCATCGGTGTCGATATCAGTTCGACCGCGGTAAAGCTGCTACAACTCAG
TCAGGCCGGTGGGCGTTACCGCGTCGAGCATTATGCTGTCGAGCCGTTGCCGCCCAACGCCGTTGTCGAAAAGAACATAG
TCGAGGTCGAGGCGGTGGGCGAAGCCATTCGCCGCGCCCTGGCCCGCTCCGGCTCCAAGCTCAAGCACGCGGCCGCCGCC
GTGGCGGGCTCGGCCGTGATCACCCGTATCATCCCCATGTCGGCCGATCTGTCCGAGGACGACCTCGAAGGGCAGATCCA
GGTCGAGGCCAACCAGTACATTCCCTACCCGATCGAGGAAGTCAGCCTCGATTTCGAGGTGATGGGCCCGGTCCGCGACA
ATCCCGAGATGAACAACGTGCTCCTGGCGGCGTCCCGCACCGAGAACGTCGATATGCGCATCGCCGCGCTCGACCTGGGC
GGACTGACCGCCCGCGTGGTCGACGTCGAGGCCTTCGCCATGGAGAACGCCTTCGGCATGGTCGCCGACCAGCTCGCGGT
GTCGCGCGATGCCCTGGTGGCCGTCGTCGATATCGGCGCCACCATGACCACCCTGGCCGTGCTGAAGAACCAGCGCACCA
TCTACTCGCGTGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGATCATGCGTCGCTACGGGCTGTCCTACGAGGAA
GCCGGTCGGGCCAAGCGCAAGGGTGGCCTGCCCGAGTCGTACGAGATGGAAGCGCTGGAGCCGTTCAAGGAATCGCTGGT
GCAGCAGGTCAGCCGCCTGCTGCAGTTCTTCTTCGCGGGCAGCGAATACAGCCGCGTGGACCAGGTGGTGCTGGCCGGCG
GCTGCGCTTCGATCGACGGCATCACCGAATTGCTCGAACAGCAGCTGGGCGTGCCCTGCGTCGTCGCCAATCCACTGGCG
CGCATGGCCCTGTCCAACCGCGTGCAGGCCCAGACCCTGGCCCAGGACGCCCCCGCGCTGATGATCGCCGTCGGCCTCGC
CATGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

52.924

97.159

0.514
  comM Acinetobacter baylyi ADP1

52.161

98.58

0.514
  comM Acinetobacter nosocomialis M2

52.632

97.159

0.511
  pilM Legionella pneumophila strain ERS1305867

41.643

100

0.418

Multiple sequence alignment