Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QUE83_RS25305 | Genome accession | NZ_AP028050 |
| Coordinates | 5265153..5265689 (-) | Length | 178 a.a. |
| NCBI ID | WP_039077898.1 | Uniprot ID | - |
| Organism | Phytobacter diazotrophicus strain TA9832 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5260153..5270689
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE83_RS25285 (PDTA9832_49990) | soxS | 5260489..5260812 (+) | 324 | WP_125125504.1 | superoxide response transcriptional regulator SoxS | - |
| QUE83_RS25290 (PDTA9832_50000) | - | 5260828..5262399 (-) | 1572 | WP_039077895.1 | EAL domain-containing protein | - |
| QUE83_RS25295 (PDTA9832_50010) | - | 5262740..5264143 (-) | 1404 | WP_071194347.1 | sensor domain-containing diguanylate cyclase | - |
| QUE83_RS25300 (PDTA9832_50020) | - | 5264697..5264978 (+) | 282 | WP_039077897.1 | YjcB family protein | - |
| QUE83_RS25305 (PDTA9832_50030) | ssb | 5265153..5265689 (-) | 537 | WP_039077898.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| QUE83_RS25310 (PDTA9832_50040) | uvrA | 5265941..5268766 (+) | 2826 | WP_039077899.1 | excinuclease ABC subunit UvrA | - |
| QUE83_RS25315 (PDTA9832_50050) | - | 5268780..5269148 (-) | 369 | WP_125125505.1 | MmcQ/YjbR family DNA-binding protein | - |
| QUE83_RS25320 (PDTA9832_50060) | - | 5269151..5269567 (-) | 417 | WP_039077901.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| QUE83_RS25325 (PDTA9832_50070) | aphA | 5269671..5270375 (-) | 705 | WP_039077902.1 | acid phosphatase AphA | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18881.93 Da Isoelectric Point: 5.2456
>NTDB_id=103339 QUE83_RS25305 WP_039077898.1 5265153..5265689(-) (ssb) [Phytobacter diazotrophicus strain TA9832]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQGQQGGWGQPQQPQGGNQFSGGAQSRPQQS
APAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQGQQGGWGQPQQPQGGNQFSGGAQSRPQQS
APAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=103339 QUE83_RS25305 WP_039077898.1 5265153..5265689(-) (ssb) [Phytobacter diazotrophicus strain TA9832]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCGACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGTGAGTACCTGCGTAAAGGTTCTCAGGTCTACATT
GAGGGTCAATTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCCGAGAAATACACCACCGAAGTCGTGGTTAACGTGGG
CGGCACCATGCAGATGCTCGGTGGCCGTCAGGGTGGCGGTGCTCCGGCTGGCGGCAATATGGGCGGCGGCCAGGGCCAGC
AGGGCGGTTGGGGCCAACCTCAGCAGCCGCAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCACAGCAGTCT
GCGCCGGCACCGTCTAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCGACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGTGAGTACCTGCGTAAAGGTTCTCAGGTCTACATT
GAGGGTCAATTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCCGAGAAATACACCACCGAAGTCGTGGTTAACGTGGG
CGGCACCATGCAGATGCTCGGTGGCCGTCAGGGTGGCGGTGCTCCGGCTGGCGGCAATATGGGCGGCGGCCAGGGCCAGC
AGGGCGGTTGGGGCCAACCTCAGCAGCCGCAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCACAGCAGTCT
GCGCCGGCACCGTCTAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
75 |
100 |
0.758 |
| ssb | Glaesserella parasuis strain SC1401 |
56.383 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
46.154 |
100 |
0.472 |
| ssb | Neisseria gonorrhoeae MS11 |
46.154 |
100 |
0.472 |