Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AB8810_RS05450 Genome accession   NZ_CP166096
Coordinates   1261848..1262906 (+) Length   352 a.a.
NCBI ID   WP_338123791.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 3005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1256848..1267906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8810_RS05435 (AB8810_05440) - 1257463..1258281 (-) 819 WP_369915766.1 DUF4375 domain-containing protein -
  AB8810_RS05440 (AB8810_05445) - 1258339..1258986 (-) 648 WP_179566916.1 hypothetical protein -
  AB8810_RS05445 (AB8810_05450) - 1259195..1261630 (-) 2436 WP_206229473.1 penicillin-binding protein 1A -
  AB8810_RS05450 (AB8810_05455) pilM 1261848..1262906 (+) 1059 WP_338123791.1 pilus assembly protein PilM Machinery gene
  AB8810_RS05455 (AB8810_05460) - 1262906..1263688 (+) 783 WP_369915767.1 PilN domain-containing protein -
  AB8810_RS05460 (AB8810_05465) - 1263685..1264359 (+) 675 WP_179566908.1 type 4a pilus biogenesis protein PilO -
  AB8810_RS05465 (AB8810_05470) - 1264356..1264895 (+) 540 Protein_1077 pilus assembly protein PilP -
  AB8810_RS05470 (AB8810_05475) - 1264916..1266817 (+) 1902 WP_369915768.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37710.36 Da        Isoelectric Point: 4.4501

>NTDB_id=1033349 AB8810_RS05450 WP_338123791.1 1261848..1262906(+) (pilM) [Xanthomonas sp. NCPPB 3005]
MGLIPKSQQPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRAKHAAAA
VAGSAVITKLIPMPAELDENELEAQVELEAVNYIPYPIDEVNLDFEVLGIIPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYEIEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1033349 AB8810_RS05450 WP_338123791.1 1261848..1262906(+) (pilM) [Xanthomonas sp. NCPPB 3005]
GTGGGGCTTATTCCAAAGAGTCAGCAACCGCTGATCGGTGTCGATATCAGTTCGACCGCGGTCAAGCTGTTGCAGCTGTC
CCGTAGCGGCAACCGGTTCCGCGTAGAGCACTACGCCGTGGAACCCCTGCCGCCCAACGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAGGCCGTGGGCGAGGCGATCCGCCGCGCCGTGACCCGTTCCGGCACCCGCGCCAAGCATGCCGCCGCGGCG
GTGGCCGGCTCGGCGGTGATCACCAAGCTGATTCCGATGCCGGCCGAGCTCGACGAGAACGAGCTGGAAGCGCAGGTCGA
GCTGGAGGCGGTCAACTACATCCCGTACCCGATCGACGAAGTGAACCTGGACTTCGAGGTGCTGGGGATCATCCCCAACA
ACCCGGAAATGGTGCAGGTGCTGCTGGCCGCGTCGCGCTCGGAGAACGTCGAGCTGCGCCAGTCGGCGCTGGAGCTCGGC
GGCCTGGTCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCGTTCGCGCTGGTCGCCAGCGAGCTGCCGGT
GGCGGCCGACGGCGTCGTCGCCCTGGTCGATATCGGCGCCACCATGACCACGCTCAACGTGCTGCGCGGCGGACGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTATGGCCTGACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGTTGCCGGAAAGCTACGAGATCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAATTCAATCGGGTCGACCATATCGTGCTGGCCGGCG
GTTGCGCGGCGCTGGCCGGGCTGCCGGAGATGGTCGAGGAACAACTGGGGGTGGCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGGCCGAAGGTCCAGGCGCATGCGCTGGCCCAGGACGCACCGGCGCTGATGATCGCCACCGGCCTGGC
TCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.705

100

0.517
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.143

99.432

0.469

Multiple sequence alignment