Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB8814_RS07745 Genome accession   NZ_CP166090
Coordinates   1869777..1870307 (+) Length   176 a.a.
NCBI ID   WP_205394218.1    Uniprot ID   -
Organism   Xanthomonas hydrangeae strain NCPPB 4692     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1864777..1875307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8814_RS07725 (AB8814_07725) - 1865102..1865560 (+) 459 WP_205394214.1 hypothetical protein -
  AB8814_RS07730 (AB8814_07730) murL 1865557..1866912 (+) 1356 WP_205394215.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  AB8814_RS07735 (AB8814_07735) murD 1866893..1868302 (+) 1410 WP_205394216.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  AB8814_RS07740 (AB8814_07740) - 1868505..1869503 (-) 999 WP_205394217.1 polyprenyl synthetase family protein -
  AB8814_RS07745 (AB8814_07745) ssb 1869777..1870307 (+) 531 WP_205394218.1 single-stranded DNA-binding protein Machinery gene
  AB8814_RS07750 (AB8814_07750) - 1870610..1872808 (+) 2199 WP_205394219.1 TonB-dependent siderophore receptor -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18961.85 Da        Isoelectric Point: 5.3177

>NTDB_id=1033321 AB8814_RS07745 WP_205394218.1 1869777..1870307(+) (ssb) [Xanthomonas hydrangeae strain NCPPB 4692]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGGGMGGDRPQRTQAPRQQQGSGGGGQGGGQDYAPRRQQPAQQ
QSAPPMDDFADDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1033321 AB8814_RS07745 WP_205394218.1 1869777..1870307(+) (ssb) [Xanthomonas hydrangeae strain NCPPB 4692]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGTCTGGCCACCACCAGCATGCGCAAGGACCGCGAGGGCAACAACCAGGAGCGTACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTCTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGTACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGTGGCGGTGGCGGTGGCGGTGGCATGGGCGGCGATCGTCCGCAGCGCACGCAGGCGCCGC
GTCAGCAGCAAGGCAGTGGCGGCGGTGGTCAGGGCGGCGGTCAGGATTACGCCCCGCGTCGTCAGCAGCCGGCCCAGCAG
CAGTCGGCACCGCCGATGGACGACTTTGCGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.739

100

0.489
  ssb Glaesserella parasuis strain SC1401

45.699

100

0.483
  ssb Neisseria meningitidis MC58

46.067

100

0.466
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.46

Multiple sequence alignment