Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB8814_RS05020 Genome accession   NZ_CP166090
Coordinates   1217050..1218108 (+) Length   352 a.a.
NCBI ID   WP_369910216.1    Uniprot ID   -
Organism   Xanthomonas hydrangeae strain NCPPB 4692     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1212050..1223108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8814_RS05005 (AB8814_05005) - 1212149..1213438 (+) 1290 WP_006451360.1 citrate synthase -
  AB8814_RS05010 (AB8814_05010) - 1213542..1214192 (-) 651 WP_205393846.1 hypothetical protein -
  AB8814_RS05015 (AB8814_05015) - 1214408..1216834 (-) 2427 WP_205393847.1 penicillin-binding protein 1A -
  AB8814_RS05020 (AB8814_05020) comM 1217050..1218108 (+) 1059 WP_369910216.1 pilus assembly protein PilM Machinery gene
  AB8814_RS05025 (AB8814_05025) - 1218108..1218875 (+) 768 WP_205393849.1 PilN domain-containing protein -
  AB8814_RS05030 (AB8814_05030) - 1218872..1219537 (+) 666 WP_006451354.1 type 4a pilus biogenesis protein PilO -
  AB8814_RS05035 (AB8814_05035) - 1219534..1220067 (+) 534 WP_006451353.1 pilus assembly protein PilP -
  AB8814_RS05040 (AB8814_05040) - 1220087..1221985 (+) 1899 WP_205393850.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37596.19 Da        Isoelectric Point: 4.3882

>NTDB_id=1033312 AB8814_RS05020 WP_369910216.1 1217050..1218108(+) (comM) [Xanthomonas hydrangeae strain NCPPB 4692]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLAAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1033312 AB8814_RS05020 WP_369910216.1 1217050..1218108(+) (comM) [Xanthomonas hydrangeae strain NCPPB 4692]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
ACGTAGCGGGAATCGTTTTCGCGTGGATCATTACGCGGTGGAACCGTTGCCGCCGAACGCGGTCGTTGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAATCGTTCCGGCAGCAAGGCCAAGAACGCGGCTGCGGCC
GTGGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGACAGCGATATGGAAGCCCAGGTCGA
ACTCGAGGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAAGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCCGCGCTGGAACTCGGT
GGCCTGGCTGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAAAACGCGTTTGCCCTGGTCGCCAGCGAGCTGCCGGT
GGCCGCCGATGCAGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGCCTGACCTATGAAGAA
GCCGGCCTGGCCAAGCGTCAGGGCGGTTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAAGAGGCGACGGT
GCAGCAGATCAGCCGCTTGTTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GGTGCGCCGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCCAACCCGCTTGCA
CAGATGACGCTCGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.712

99.716

0.506
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment