Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB8P72_RS10470 Genome accession   NZ_CP166085
Coordinates   2472950..2473576 (-) Length   208 a.a.
NCBI ID   WP_193031264.1    Uniprot ID   -
Organism   Psychrobacter sp. CLB018     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2467950..2478576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8P72_RS10455 (AB8P72_10460) - 2470259..2471191 (-) 933 WP_068403897.1 type II secretion system protein N -
  AB8P72_RS10460 (AB8P72_10465) gspN 2471192..2472016 (-) 825 WP_068403900.1 type II secretion system protein N -
  AB8P72_RS10465 (AB8P72_10470) - 2472227..2472550 (-) 324 WP_068403902.1 H-NS family nucleoid-associated regulatory protein -
  AB8P72_RS10470 (AB8P72_10475) ssb 2472950..2473576 (-) 627 WP_193031264.1 single-stranded DNA-binding protein Machinery gene
  AB8P72_RS10475 (AB8P72_10480) - 2473685..2475049 (-) 1365 WP_193031262.1 MFS transporter -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22552.28 Da        Isoelectric Point: 5.9191

>NTDB_id=1033247 AB8P72_RS10470 WP_193031264.1 2472950..2473576(-) (ssb) [Psychrobacter sp. CLB018]
MRGVNKVIIIGNLGADPEARQFSNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDPNGQDRYITEIRAEQMQMLDGATGGSNDGGGFGGAQGSNQYQNQGSGFAGQNQNQSGQNNFNQQGNNQQGG
YNQGGAQGSNQNSFNNQNVPAQQNQFNKPAQTKPTAMPDGPVDDDIPF

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1033247 AB8P72_RS10470 WP_193031264.1 2472950..2473576(-) (ssb) [Psychrobacter sp. CLB018]
ATGCGCGGAGTTAATAAAGTTATCATCATTGGTAACCTTGGAGCAGACCCCGAGGCTCGCCAATTTAGTAATGGCGGTAG
CGTGACCAACATTTCGGTTGCCACCTCAGAGCAGTGGACTGACAAGCAAAGCGGTGAAAAAAGAGAAGCGACGGAATGGC
ATCGCATTTCATTGTTTAACCGTCTAGGCGAAATCGCAGCACAATATTTGCGCAAAGGCAGTAAGGTTTATATCGAAGGT
AGCTTGCGTACGCGTAAATACCAAGATCCTAACGGCCAAGACCGTTATATTACCGAGATTCGTGCTGAGCAAATGCAAAT
GCTCGATGGTGCGACTGGCGGTAGTAATGATGGCGGCGGCTTTGGTGGTGCTCAAGGCTCGAATCAATATCAGAATCAGG
GCAGCGGTTTTGCTGGTCAGAACCAAAACCAAAGTGGCCAAAATAACTTTAACCAACAGGGAAATAACCAACAAGGTGGT
TATAACCAAGGCGGCGCTCAGGGTAGCAACCAAAACAGCTTTAATAATCAAAATGTGCCTGCACAGCAGAACCAATTTAA
TAAACCTGCTCAAACAAAACCGACGGCAATGCCTGACGGTCCGGTAGATGACGATATTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.358

100

0.534
  ssb Vibrio cholerae strain A1552

45.024

100

0.457
  ssb Neisseria meningitidis MC58

37.5

100

0.375
  ssb Neisseria gonorrhoeae MS11

37.5

100

0.375

Multiple sequence alignment