Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB8P72_RS05135 Genome accession   NZ_CP166085
Coordinates   1185417..1185914 (+) Length   165 a.a.
NCBI ID   WP_369958140.1    Uniprot ID   -
Organism   Psychrobacter sp. CLB018     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1167614..1215189 1185417..1185914 within 0
IS/Tn 1186086..1186259 1185417..1185914 flank 172


Gene organization within MGE regions


Location: 1167614..1215189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8P72_RS05095 (AB8P72_05100) - 1167614..1171066 (-) 3453 WP_369958132.1 tyrosine-type recombinase/integrase -
  AB8P72_RS05100 (AB8P72_05105) - 1171073..1173502 (-) 2430 WP_369958133.1 hypothetical protein -
  AB8P72_RS05105 (AB8P72_05110) - 1174102..1174971 (-) 870 WP_369958134.1 hypothetical protein -
  AB8P72_RS05110 (AB8P72_05115) drmB 1175317..1180431 (+) 5115 WP_369958135.1 DrmB family protein -
  AB8P72_RS05115 (AB8P72_05120) - 1180424..1181635 (+) 1212 WP_369958136.1 hypothetical protein -
  AB8P72_RS05120 (AB8P72_05125) - 1181632..1183218 (+) 1587 WP_369958137.1 hypothetical protein -
  AB8P72_RS05125 (AB8P72_05130) - 1183215..1184792 (+) 1578 WP_369958138.1 NERD domain-containing protein -
  AB8P72_RS05130 (AB8P72_05135) - 1185012..1185176 (+) 165 WP_369958139.1 transposase -
  AB8P72_RS05135 (AB8P72_05140) ssb 1185417..1185914 (+) 498 WP_369958140.1 single-stranded DNA-binding protein Machinery gene
  AB8P72_RS05140 (AB8P72_05145) - 1186086..1186582 (+) 497 Protein_999 transposase -
  AB8P72_RS05145 (AB8P72_05150) - 1187133..1188281 (+) 1149 WP_369958271.1 IS256 family transposase -
  AB8P72_RS05150 (AB8P72_05155) - 1188563..1189516 (-) 954 WP_369958141.1 Lrp/AsnC family transcriptional regulator -
  AB8P72_RS05155 (AB8P72_05160) - 1189629..1190906 (+) 1278 WP_369958142.1 MFS transporter -
  AB8P72_RS05160 (AB8P72_05165) - 1190906..1192246 (+) 1341 WP_369958143.1 amidase -
  AB8P72_RS05165 (AB8P72_05170) - 1192411..1192824 (+) 414 WP_369958144.1 transposase family protein -
  AB8P72_RS05170 (AB8P72_05175) - 1192739..1193242 (+) 504 WP_369958145.1 transposase family protein -
  AB8P72_RS05175 (AB8P72_05180) - 1193424..1196942 (+) 3519 WP_369958146.1 TM0106 family RecB-like putative nuclease -
  AB8P72_RS05180 (AB8P72_05185) - 1197028..1197531 (+) 504 WP_369958147.1 hypothetical protein -
  AB8P72_RS05185 (AB8P72_05190) - 1197771..1200518 (+) 2748 WP_369958148.1 hypothetical protein -
  AB8P72_RS05190 (AB8P72_05195) - 1200816..1203251 (+) 2436 WP_369958149.1 AAA family ATPase -
  AB8P72_RS05195 (AB8P72_05200) mcrC 1203256..1204371 (+) 1116 WP_369958150.1 5-methylcytosine-specific restriction endonuclease system specificity protein McrC -
  AB8P72_RS05200 (AB8P72_05205) - 1204515..1205261 (+) 747 WP_369958151.1 hypothetical protein -
  AB8P72_RS05205 (AB8P72_05210) - 1205349..1206068 (-) 720 WP_369958152.1 3'-5' exonuclease -
  AB8P72_RS05210 (AB8P72_05215) - 1206225..1207124 (-) 900 WP_306495670.1 SMP-30/gluconolactonase/LRE family protein -
  AB8P72_RS05215 (AB8P72_05220) - 1207196..1208359 (-) 1164 WP_238049399.1 iron-containing alcohol dehydrogenase -
  AB8P72_RS05220 (AB8P72_05225) - 1208707..1209564 (+) 858 WP_369958153.1 PP2C family serine/threonine-protein phosphatase -
  AB8P72_RS05225 (AB8P72_05230) - 1209713..1210714 (+) 1002 WP_369958154.1 helix-turn-helix transcriptional regulator -
  AB8P72_RS05230 (AB8P72_05235) - 1210766..1212031 (+) 1266 WP_238049396.1 PD-(D/E)XK nuclease family protein -
  AB8P72_RS05235 (AB8P72_05240) - 1212062..1213066 (+) 1005 WP_369958155.1 leucine-rich repeat domain-containing protein -
  AB8P72_RS05240 (AB8P72_05245) - 1213158..1213604 (+) 447 WP_369958156.1 DUF1810 domain-containing protein -
  AB8P72_RS05245 (AB8P72_05250) - 1213788..1214411 (+) 624 WP_306495681.1 hypothetical protein -
  AB8P72_RS05250 (AB8P72_05255) - 1214452..1215189 (-) 738 WP_201559357.1 M48 family metallopeptidase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18562.37 Da        Isoelectric Point: 6.6492

>NTDB_id=1033246 AB8P72_RS05135 WP_369958140.1 1185417..1185914(+) (ssb) [Psychrobacter sp. CLB018]
MRGVNKVIIIGNLGADPDARQFNNGGSVTNISVATSEQWTDKKSGEKREATEWHRVSLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQAPDGSDRYATEIRADQMQMLDSNDDNTKQISHPERQKPQNDHQSTNNKINHNNVNQGLPPGPVDDDIPFAPH
FDGEF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1033246 AB8P72_RS05135 WP_369958140.1 1185417..1185914(+) (ssb) [Psychrobacter sp. CLB018]
ATGCGTGGAGTTAATAAAGTCATCATCATCGGAAACCTCGGTGCAGATCCTGATGCACGTCAATTTAATAACGGTGGTAG
TGTTACCAATATATCAGTAGCGACCTCTGAGCAATGGACTGATAAAAAAAGTGGCGAAAAAAGAGAAGCGACCGAATGGC
ATCGTGTTTCACTATTCAATCGTTTGGGTGAAATCGCCGCTCAGTATTTGCGTAAAGGCAGCAAAGTCTATATTGAGGGT
AGCTTACGCACTCGTAAGTACCAAGCCCCTGACGGTAGCGATCGTTATGCGACTGAAATTCGCGCTGACCAGATGCAGAT
GCTAGATAGCAATGACGATAACACAAAACAAATCAGTCATCCGGAACGTCAAAAGCCTCAGAACGACCATCAATCAACCA
ACAATAAAATAAATCACAACAATGTTAATCAGGGGCTTCCACCTGGGCCAGTAGATGACGATATTCCTTTCGCTCCTCAC
TTTGACGGTGAGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.527
  ssb Vibrio cholerae strain A1552

46.591

100

0.497
  ssb Neisseria meningitidis MC58

41.04

100

0.43
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.43

Multiple sequence alignment