Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB8O67_RS21775 Genome accession   NZ_CP166053
Coordinates   4203709..4204227 (-) Length   172 a.a.
NCBI ID   WP_010332657.1    Uniprot ID   A0A9Q6ABZ4
Organism   Bacillus halotolerans strain XYK2-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4198709..4209227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS21745 (AB8O67_21735) - 4199220..4200572 (+) 1353 WP_326138854.1 MFS transporter -
  AB8O67_RS21750 (AB8O67_21740) - 4200603..4201157 (-) 555 WP_229044547.1 maltose acetyltransferase domain-containing protein -
  AB8O67_RS21755 (AB8O67_21745) - 4201176..4201556 (-) 381 WP_044160273.1 VOC family protein -
  AB8O67_RS21760 (AB8O67_21750) - 4201613..4202548 (-) 936 WP_316273855.1 LacI family DNA-binding transcriptional regulator -
  AB8O67_RS21765 (AB8O67_21755) xth 4202608..4203366 (-) 759 WP_059292115.1 exodeoxyribonuclease III -
  AB8O67_RS21770 (AB8O67_21760) rpsR 4203427..4203666 (-) 240 WP_010332656.1 30S ribosomal protein S18 -
  AB8O67_RS21775 (AB8O67_21765) ssbA 4203709..4204227 (-) 519 WP_010332657.1 single-stranded DNA-binding protein SsbA Machinery gene
  AB8O67_RS21780 (AB8O67_21770) rpsF 4204268..4204555 (-) 288 WP_010332658.1 30S ribosomal protein S6 -
  AB8O67_RS21785 (AB8O67_21775) ychF 4204666..4205766 (-) 1101 WP_326138853.1 redox-regulated ATPase YchF -
  AB8O67_RS21790 (AB8O67_21780) - 4205893..4207896 (-) 2004 WP_369888408.1 molybdopterin-dependent oxidoreductase -
  AB8O67_RS21795 (AB8O67_21785) - 4207947..4208153 (-) 207 WP_044160282.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18715.28 Da        Isoelectric Point: 4.7621

>NTDB_id=1033239 AB8O67_RS21775 WP_010332657.1 4203709..4204227(-) (ssbA) [Bacillus halotolerans strain XYK2-4]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1033239 AB8O67_RS21775 WP_010332657.1 4203709..4204227(-) (ssbA) [Bacillus halotolerans strain XYK2-4]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
CACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCTGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGGCAGCGTGTCTTCGTGACCGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAATCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

99.419

100

0.994
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

36.066

100

0.384

Multiple sequence alignment