Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB8O67_RS18915 Genome accession   NZ_CP166053
Coordinates   3628353..3629042 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus halotolerans strain XYK2-4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3623353..3634042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS18880 (AB8O67_18875) flgN 3623535..3624017 (-) 483 WP_010332064.1 flagellar protein FlgN -
  AB8O67_RS18885 (AB8O67_18880) flgM 3624032..3624298 (-) 267 WP_044159458.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB8O67_RS18890 (AB8O67_18885) - 3624378..3624797 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  AB8O67_RS18895 (AB8O67_18890) comFC 3624871..3625593 (-) 723 WP_193659778.1 phosphoribosyltransferase family protein Machinery gene
  AB8O67_RS18900 (AB8O67_18895) - 3625557..3625853 (-) 297 WP_059353628.1 late competence development ComFB family protein -
  AB8O67_RS18905 (AB8O67_18900) comFA 3625910..3627304 (-) 1395 WP_326139353.1 ATP-dependent helicase ComFA Machinery gene
  AB8O67_RS18910 (AB8O67_18905) - 3627411..3628256 (-) 846 WP_044159470.1 DegV family protein -
  AB8O67_RS18915 (AB8O67_18910) degU 3628353..3629042 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB8O67_RS18920 (AB8O67_18915) degS 3629125..3630282 (-) 1158 WP_044159475.1 two-component sensor histidine kinase DegS Regulator
  AB8O67_RS18925 (AB8O67_18920) - 3630499..3631152 (+) 654 WP_044159478.1 YigZ family protein -
  AB8O67_RS18930 (AB8O67_18925) - 3631152..3632276 (+) 1125 WP_326139352.1 LCP family protein -
  AB8O67_RS18935 (AB8O67_18930) - 3632348..3633424 (-) 1077 WP_044159481.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1033230 AB8O67_RS18915 WP_003219701.1 3628353..3629042(-) (degU) [Bacillus halotolerans strain XYK2-4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1033230 AB8O67_RS18915 WP_003219701.1 3628353..3629042(-) (degU) [Bacillus halotolerans strain XYK2-4]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGGGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment