Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB8O67_RS18905 Genome accession   NZ_CP166053
Coordinates   3625910..3627304 (-) Length   464 a.a.
NCBI ID   WP_326139353.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XYK2-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3620910..3632304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS18870 (AB8O67_18865) flgL 3621087..3621983 (-) 897 WP_106295418.1 flagellar hook-associated protein FlgL -
  AB8O67_RS18875 (AB8O67_18870) flgK 3621993..3623516 (-) 1524 WP_326139354.1 flagellar hook-associated protein FlgK -
  AB8O67_RS18880 (AB8O67_18875) flgN 3623535..3624017 (-) 483 WP_010332064.1 flagellar protein FlgN -
  AB8O67_RS18885 (AB8O67_18880) flgM 3624032..3624298 (-) 267 WP_044159458.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB8O67_RS18890 (AB8O67_18885) - 3624378..3624797 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  AB8O67_RS18895 (AB8O67_18890) comFC 3624871..3625593 (-) 723 WP_193659778.1 phosphoribosyltransferase family protein Machinery gene
  AB8O67_RS18900 (AB8O67_18895) - 3625557..3625853 (-) 297 WP_059353628.1 late competence development ComFB family protein -
  AB8O67_RS18905 (AB8O67_18900) comFA 3625910..3627304 (-) 1395 WP_326139353.1 ATP-dependent helicase ComFA Machinery gene
  AB8O67_RS18910 (AB8O67_18905) - 3627411..3628256 (-) 846 WP_044159470.1 DegV family protein -
  AB8O67_RS18915 (AB8O67_18910) degU 3628353..3629042 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB8O67_RS18920 (AB8O67_18915) degS 3629125..3630282 (-) 1158 WP_044159475.1 two-component sensor histidine kinase DegS Regulator
  AB8O67_RS18925 (AB8O67_18920) - 3630499..3631152 (+) 654 WP_044159478.1 YigZ family protein -
  AB8O67_RS18930 (AB8O67_18925) - 3631152..3632276 (+) 1125 WP_326139352.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52785.78 Da        Isoelectric Point: 9.5879

>NTDB_id=1033229 AB8O67_RS18905 WP_326139353.1 3625910..3627304(-) (comFA) [Bacillus halotolerans strain XYK2-4]
MQTKTSESNSLFSKELQQQLQGRHLLRTEIPFSDEIIDWHIEHGYISAEGSISKNKWGYRCNRCGQNDQQYFSSYHSSGE
DKVYCRSCVMMGRVSEDVSLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFPG
IELALNLRLRVCIATPRTDVVLELAPRLNAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLTRNKIPNAVK
RWIEQHVKEGRPVFLFVPSISVLEKAASCFKDMNYRTAAVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1033229 AB8O67_RS18905 WP_326139353.1 3625910..3627304(-) (comFA) [Bacillus halotolerans strain XYK2-4]
ATGCAGACTAAGACATCAGAATCGAACAGCCTATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTGAG
AACAGAAATCCCATTTTCTGACGAGATCATCGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGGGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATGTTTCTTTATATTCCTGGTGCAAGGAGGC
GGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATTGGCATTAAATTTAAGACTGCGTGTTTGTATTGCAACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAATGCTGCATTTCAGGGTGCTGATATTTCAGCTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGCTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGCGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACATATAAAGGTGAGTTAAAATCCGTTCGCATACCGGCCAGATACCATCGGAAAC
CTTTGCCTGAACCGCGTTTTCAGTGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
AGATGGATAGAACAGCATGTGAAAGAAGGAAGGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTTTGGAAAAGGCTGC
TTCTTGTTTTAAAGATATGAATTATCGAACAGCGGCTGTACATGCGGAAGATAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAGCATATAAAAATAATGA
ATGAATTGGCTCTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-424)

Type III restriction enzyme, res subunit (ResIII)

(121-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.716

98.707

0.836

Multiple sequence alignment