Detailed information NTG1033041

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: DXE63_RS09200
• Genome accession: NZ_LT992458
• Coordinates: 1736846..1737850 (+)
• Length: 334 a.a.
• NCBI ID: WP_001005766.1
• Uniprot ID: -
• Organism: Staphylococcus aureus isolate 7_4623
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1731846..1742850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DXE63_RS09165	mreD	1732004..1732534 (+)	531	WP_001259929.1	rod shape-determining protein MreD	-
DXE63_RS09170	rplU	1733021..1733329 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
DXE63_RS09175	-	1733335..1733655 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
DXE63_RS09180	rpmA	1733667..1733951 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
DXE63_RS09185	obgE	1734438..1735730 (+)	1293	WP_000496090.1	GTPase ObgE	-
DXE63_RS09190	-	1735743..1736198 (+)	456	WP_000368902.1	ACT domain-containing protein	-
DXE63_RS09195	ruvA	1736212..1736814 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
DXE63_RS09200	ruvB	1736846..1737850 (+)	1005	WP_001005766.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
DXE63_RS09205	queA	1737852..1738877 (+)	1026	WP_001019177.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
DXE63_RS09210	tgt	1738900..1740039 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
DXE63_RS09215	yajC	1740058..1740318 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37687.98 Da
• Isoelectric Point: 5.0865

>NTDB_id=1033041 DXE63_RS09200 WP_001005766.1 1736846..1737850(+) (ruvB) [Staphylococcus aureus isolate 7_4623]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDAIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=1033041 DXE63_RS09200 WP_001005766.1 1736846..1737850(+) (ruvB) [Staphylococcus aureus isolate 7_4623]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATTATTGCCAATGAAATGGAAGTAAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACT
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTAGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCCAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATGCGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.644	97.605	0.641
ruvB	Streptococcus pneumoniae TIGR4	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae R6	57.576	98.802	0.569
ruvB	Streptococcus pneumoniae D39	57.576	98.802	0.569
ruvB	Helicobacter pylori 26695	56.173	97.006	0.545
ruvB	Synechocystis sp. PCC 6803	54.062	95.808	0.518