Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB8W25_RS20450 Genome accession   NZ_CP166012
Coordinates   4364395..4364937 (+) Length   180 a.a.
NCBI ID   WP_007702264.1    Uniprot ID   -
Organism   Cronobacter dublinensis strain 2012-05-18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4359395..4369937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8W25_RS20435 (AB8W25_20440) - 4360380..4360724 (-) 345 WP_105631063.1 hypothetical protein -
  AB8W25_RS20440 (AB8W25_20445) - 4360737..4361183 (-) 447 WP_369834010.1 hypothetical protein -
  AB8W25_RS20445 (AB8W25_20450) uvrA 4361339..4364164 (-) 2826 WP_007752786.1 excinuclease ABC subunit UvrA -
  AB8W25_RS20450 (AB8W25_20455) ssb 4364395..4364937 (+) 543 WP_007702264.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AB8W25_RS20455 (AB8W25_20460) - 4365437..4366483 (+) 1047 WP_105631061.1 GGDEF domain-containing protein -
  AB8W25_RS20460 (AB8W25_20465) - 4366659..4367003 (+) 345 WP_369834011.1 hypothetical protein -
  AB8W25_RS20465 (AB8W25_20470) - 4367061..4367339 (-) 279 WP_007712039.1 YjcB family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19291.33 Da        Isoelectric Point: 5.2358

>NTDB_id=1032996 AB8W25_RS20450 WP_007702264.1 4364395..4364937(+) (ssb) [Cronobacter dublinensis strain 2012-05-18]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQIYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQ
QQAPAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1032996 AB8W25_RS20450 WP_007702264.1 4364395..4364937(+) (ssb) [Cronobacter dublinensis strain 2012-05-18]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCGACTTCCGAATCCTGGCGCGACAAGCAGACCGGTGAGATGAAAGAAGTAACCG
AATGGCACAGCGTGGTGCTGTACGGCAAGCTGGCGGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCGCAGATCTACATC
GAAGGTCAGCTGCGCACCCGTAAGTGGCAGGATCAGAGCGGTCAGGATCGCTACTCTACCGAAGTGGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCTCCGGCAGGCGGCAACATGGGCGGCGGCCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGCAGCAGGGTGGCGGCGCGCAGTTCAGCGGCGGCGCACAGTCTCGCCCGCAG
CAGCAGGCACCGGCGCCTTCCAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.725

100

0.756
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.594
  ssb Neisseria gonorrhoeae MS11

47.283

100

0.483
  ssb Neisseria meningitidis MC58

45.109

100

0.461

Multiple sequence alignment