Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   DXE58_RS12470 Genome accession   NZ_LT992456
Coordinates   2410842..2411528 (+) Length   228 a.a.
NCBI ID   WP_000692886.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1_1439     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2405842..2416528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE58_RS12450 - 2405962..2408592 (+) 2631 WP_000425349.1 valine--tRNA ligase -
  DXE58_RS12455 - 2408605..2409876 (+) 1272 WP_001108343.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  DXE58_RS12465 - 2410138..2410845 (+) 708 WP_000261102.1 prepilin peptidase -
  DXE58_RS12470 ysxA/radC 2410842..2411528 (+) 687 WP_000692886.1 RadC family protein Machinery gene
  DXE58_RS12475 - 2411596..2411880 (+) 285 WP_000171859.1 hypothetical protein -
  DXE58_RS12480 - 2411997..2412194 (-) 198 WP_000041095.1 hypothetical protein -
  DXE58_RS12485 - 2412354..2412827 (+) 474 WP_001236734.1 DUF4930 family protein -
  DXE58_RS12490 - 2412901..2413020 (+) 120 WP_000840603.1 hypothetical protein -
  DXE58_RS12495 mreC 2413218..2414060 (+) 843 WP_000911033.1 rod shape-determining protein MreC -
  DXE58_RS12500 mreD 2414060..2414590 (+) 531 WP_001259929.1 rod shape-determining protein MreD -
  DXE58_RS12505 rplU 2415077..2415385 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  DXE58_RS12510 - 2415391..2415711 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  DXE58_RS12515 rpmA 2415723..2416007 (+) 285 WP_000916187.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25311.24 Da        Isoelectric Point: 6.7572

>NTDB_id=1032985 DXE58_RS12470 WP_000692886.1 2410842..2411528(+) (ysxA/radC) [Staphylococcus aureus isolate 1_1439]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1032985 DXE58_RS12470 WP_000692886.1 2410842..2411528(+) (ysxA/radC) [Staphylococcus aureus isolate 1_1439]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377