Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB8W23_RS06455 | Genome accession | NZ_CP166010 |
| Coordinates | 1313156..1313692 (+) | Length | 178 a.a. |
| NCBI ID | WP_004386202.1 | Uniprot ID | A0A2S9UB01 |
| Organism | Cronobacter malonaticus LMG 23826 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1308156..1318692
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB8W23_RS06440 (AB8W23_06440) | - | 1309141..1309485 (-) | 345 | WP_007778519.1 | hypothetical protein | - |
| AB8W23_RS06445 (AB8W23_06445) | - | 1309498..1310010 (-) | 513 | WP_007778516.1 | hypothetical protein | - |
| AB8W23_RS06450 (AB8W23_06450) | uvrA | 1310100..1312925 (-) | 2826 | WP_023897907.1 | excinuclease ABC subunit UvrA | - |
| AB8W23_RS06455 (AB8W23_06455) | ssb | 1313156..1313692 (+) | 537 | WP_004386202.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| AB8W23_RS06460 (AB8W23_06460) | - | 1314038..1315084 (+) | 1047 | WP_007778508.1 | GGDEF domain-containing protein | - |
| AB8W23_RS06465 (AB8W23_06465) | - | 1315260..1315604 (+) | 345 | WP_032968434.1 | hypothetical protein | - |
| AB8W23_RS06470 (AB8W23_06470) | - | 1315667..1315945 (-) | 279 | WP_007778502.1 | YjcB family protein | - |
| AB8W23_RS06475 (AB8W23_06475) | - | 1316533..1318140 (+) | 1608 | WP_144432650.1 | EAL domain-containing protein | - |
| AB8W23_RS06480 (AB8W23_06480) | soxS | 1318128..1318451 (-) | 324 | WP_004386206.1 | superoxide response transcriptional regulator SoxS | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19109.11 Da Isoelectric Point: 5.2358
>NTDB_id=1032963 AB8W23_RS06455 WP_004386202.1 1313156..1313692(+) (ssb) [Cronobacter malonaticus LMG 23826]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQQQ
APAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQQQ
APAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=1032963 AB8W23_RS06455 WP_004386202.1 1313156..1313692(+) (ssb) [Cronobacter malonaticus LMG 23826]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCGACTTCCGAATCCTGGCGCGATAAGCAGACCGGTGAGATGAAAGAAGTGACCG
AATGGCACAGCGTCGTGCTGTACGGGAAACTGGCGGAAGTCGCTGGCGAATACCTGCGCAAAGGCTCGCAGGTGTACATC
GAAGGTCAGCTGCGTACCCGTAAGTGGCAGGATCAGAGCGGTCAGGATCGCTACTCTACCGAAGTTGTTGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCAGGCGGCAACATGGGCGGCGGTCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGCAGCAGGGTGGTGGCGCGCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAG
GCGCCAGCGCCTTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCGACTTCCGAATCCTGGCGCGATAAGCAGACCGGTGAGATGAAAGAAGTGACCG
AATGGCACAGCGTCGTGCTGTACGGGAAACTGGCGGAAGTCGCTGGCGAATACCTGCGCAAAGGCTCGCAGGTGTACATC
GAAGGTCAGCTGCGTACCCGTAAGTGGCAGGATCAGAGCGGTCAGGATCGCTACTCTACCGAAGTTGTTGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCAGGCGGCAACATGGGCGGCGGTCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGCAGCAGGGTGGTGGCGCGCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAG
GCGCCAGCGCCTTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.725 |
100 |
0.764 |
| ssb | Glaesserella parasuis strain SC1401 |
58.378 |
100 |
0.607 |
| ssb | Neisseria meningitidis MC58 |
47.802 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
47.802 |
100 |
0.489 |