Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB8W22_RS05990 Genome accession   NZ_CP166007
Coordinates   1255105..1255641 (+) Length   178 a.a.
NCBI ID   WP_004386202.1    Uniprot ID   A0A2S9UB01
Organism   Cronobacter malonaticus strain 2004-29-02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1250105..1260641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8W22_RS05975 (AB8W22_05985) - 1251090..1251434 (-) 345 WP_007778519.1 hypothetical protein -
  AB8W22_RS05980 (AB8W22_05990) - 1251447..1251959 (-) 513 WP_007778516.1 hypothetical protein -
  AB8W22_RS05985 (AB8W22_05995) uvrA 1252049..1254874 (-) 2826 WP_023897907.1 excinuclease ABC subunit UvrA -
  AB8W22_RS05990 (AB8W22_06000) ssb 1255105..1255641 (+) 537 WP_004386202.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AB8W22_RS05995 (AB8W22_06005) - 1255987..1257033 (+) 1047 WP_032969571.1 GGDEF domain-containing protein -
  AB8W22_RS06000 (AB8W22_06010) - 1257209..1257553 (+) 345 WP_032968434.1 hypothetical protein -
  AB8W22_RS06005 (AB8W22_06015) - 1257616..1257894 (-) 279 WP_007778502.1 YjcB family protein -
  AB8W22_RS06010 (AB8W22_06020) - 1258482..1260089 (+) 1608 WP_144083699.1 EAL domain-containing protein -
  AB8W22_RS06015 (AB8W22_06025) soxS 1260077..1260400 (-) 324 WP_004386206.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19109.11 Da        Isoelectric Point: 5.2358

>NTDB_id=1032942 AB8W22_RS05990 WP_004386202.1 1255105..1255641(+) (ssb) [Cronobacter malonaticus strain 2004-29-02]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQQQ
APAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1032942 AB8W22_RS05990 WP_004386202.1 1255105..1255641(+) (ssb) [Cronobacter malonaticus strain 2004-29-02]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCGACTTCCGAATCCTGGCGCGATAAGCAGACCGGTGAGATGAAAGAAGTGACCG
AATGGCACAGCGTCGTGCTGTACGGGAAACTGGCGGAAGTCGCTGGCGAATACCTGCGCAAAGGCTCGCAGGTGTACATC
GAAGGTCAGCTGCGTACCCGTAAGTGGCAGGATCAGAGCGGTCAGGATCGCTACTCTACCGAAGTTGTTGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCAGGCGGCAACATGGGCGGCGGTCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGCAGCAGGGTGGTGGCGCGCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAG
GCGCCAGCGCCTTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S9UB01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.725

100

0.764
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.607
  ssb Neisseria meningitidis MC58

47.802

100

0.489
  ssb Neisseria gonorrhoeae MS11

47.802

100

0.489

Multiple sequence alignment