Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB8W27_RS02230 Genome accession   NZ_CP165997
Coordinates   464505..465044 (+) Length   179 a.a.
NCBI ID   WP_015742643.1    Uniprot ID   -
Organism   Cronobacter turicensis strain LMG23827     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 459505..470044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8W27_RS02215 (AB8W27_02215) - 460488..460832 (-) 345 WP_015742647.1 hypothetical protein -
  AB8W27_RS02220 (AB8W27_02220) - 460845..461357 (-) 513 WP_015742646.1 hypothetical protein -
  AB8W27_RS02225 (AB8W27_02225) uvrA 461449..464274 (-) 2826 WP_105581325.1 excinuclease ABC subunit UvrA -
  AB8W27_RS02230 (AB8W27_02230) ssb 464505..465044 (+) 540 WP_015742643.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AB8W27_RS02235 (AB8W27_02235) - 465397..466443 (+) 1047 WP_015742642.1 GGDEF domain-containing protein -
  AB8W27_RS02240 (AB8W27_02240) - 466619..466963 (+) 345 WP_015742641.1 hypothetical protein -
  AB8W27_RS02245 (AB8W27_02245) - 467026..467304 (-) 279 WP_007764568.1 YjcB family protein -
  AB8W27_RS02250 (AB8W27_02250) - 467893..469500 (+) 1608 WP_161577415.1 EAL domain-containing protein -
  AB8W27_RS02255 (AB8W27_02255) soxS 469488..469811 (-) 324 WP_004386206.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19194.21 Da        Isoelectric Point: 5.2358

>NTDB_id=1032852 AB8W27_RS02230 WP_015742643.1 464505..465044(+) (ssb) [Cronobacter turicensis strain LMG23827]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQIYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQQQQGGGAQFSGGAQSRPQQ
QAPAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1032852 AB8W27_RS02230 WP_015742643.1 464505..465044(+) (ssb) [Cronobacter turicensis strain LMG23827]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCGACTTCCGAATCCTGGCGCGACAAGCAGACCGGTGAGATGAAAGAAGTGACCG
AATGGCACAGCGTTGTGCTGTACGGCAAGCTGGCGGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCGCAGATCTACATC
GAAGGTCAGCTGCGCACGCGTAAGTGGCAGGATCAGAGCGGTCAGGATCGCTACTCTACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCAACATGGGCGGCGGCCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCAGCAGCAGGGCGGCGGCGCGCAGTTCAGCGGCGGCGCACAGTCCCGTCCGCAGCAG
CAGGCGCCAGCGCCTTCTAATGAACCGCCAATGGATTTCGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.033

100

0.749
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.598
  ssb Neisseria meningitidis MC58

46.995

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.995

100

0.48

Multiple sequence alignment