Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8964_RS19685 Genome accession   NZ_AP028040
Coordinates   4273392..4273913 (-) Length   173 a.a.
NCBI ID   WP_317728314.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain H1_3_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4268392..4278913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8964_RS19655 (HBIAX_03879) - 4268584..4269201 (+) 618 WP_020925847.1 TetR/AcrR family transcriptional regulator -
  R8964_RS19660 (HBIAX_03881) - 4269506..4270363 (+) 858 WP_241052079.1 cysteine hydrolase -
  R8964_RS19665 (HBIAX_03882) - 4270499..4271089 (-) 591 WP_054515671.1 TetR/AcrR family transcriptional regulator -
  R8964_RS19670 (HBIAX_03883) - 4271221..4271526 (-) 306 WP_076407966.1 DUF4148 domain-containing protein -
  R8964_RS19675 (HBIAX_03884) - 4271606..4271911 (-) 306 WP_317728313.1 DUF4148 domain-containing protein -
  R8964_RS19680 (HBIAX_03885) - 4272180..4272908 (-) 729 WP_076407970.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  R8964_RS19685 (HBIAX_03886) ssb 4273392..4273913 (-) 522 WP_317728314.1 single-stranded DNA-binding protein Machinery gene
  R8964_RS19690 (HBIAX_03887) - 4274196..4275380 (-) 1185 WP_076407972.1 MFS transporter -
  R8964_RS19695 (HBIAX_03888) uvrA 4275515..4278370 (+) 2856 WP_404814363.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18630.65 Da        Isoelectric Point: 5.9656

>NTDB_id=103268 R8964_RS19685 WP_317728314.1 4273392..4273913(-) (ssb) [Achromobacter xylosoxidans strain H1_3_1]
MASVNKVILVGNLGRDPEVRYSPDGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGGSYGGGGGYDDAPARQPQQRAAAQRPAPQQRPAPQAAPAGG
GANLADMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=103268 R8964_RS19685 WP_317728314.1 4273392..4273913(-) (ssb) [Achromobacter xylosoxidans strain H1_3_1]
ATGGCATCGGTTAACAAAGTCATTCTCGTGGGCAACCTGGGTCGCGACCCGGAAGTCCGCTACAGCCCCGACGGGGCCGC
AATCTGCAACATGTCCATCGCCACCACCTCCACCTGGAAGGACAAGGCCTCGGGCGAGCGCCGCGAAGAAACCGAATGGC
ATCGCGTGGTCATGTACAACCGCCTGGCCGAGATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAATCGTCGCCGACCAGATGCA
GATGCTGGGCGGCCGCGAAGATGGCGGCGGCGGTGGCGGCAGCTACGGTGGTGGCGGCGGTTACGACGACGCGCCGGCGC
GCCAGCCGCAGCAACGCGCCGCGGCCCAGCGCCCGGCGCCGCAGCAGCGTCCGGCACCGCAGGCCGCGCCCGCCGGCGGC
GGCGCCAACCTGGCCGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.098

100

0.572
  ssb Glaesserella parasuis strain SC1401

51.075

100

0.549
  ssb Neisseria meningitidis MC58

52.571

100

0.532
  ssb Neisseria gonorrhoeae MS11

52.571

100

0.532

Multiple sequence alignment