Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB8E30_RS01020 Genome accession   NZ_CP165965
Coordinates   173098..173610 (+) Length   170 a.a.
NCBI ID   WP_369901591.1    Uniprot ID   -
Organism   Bacillus manliponensis strain jeju3-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 168098..178610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E30_RS00990 (AB8E30_00990) - 168442..169293 (+) 852 WP_369901585.1 ParB/RepB/Spo0J family partition protein -
  AB8E30_RS00995 (AB8E30_00995) yyaC 169310..169906 (-) 597 WP_369901586.1 spore protease YyaC -
  AB8E30_RS01000 (AB8E30_01000) - 170077..170958 (+) 882 WP_369901587.1 mechanosensitive ion channel family protein -
  AB8E30_RS01005 (AB8E30_01005) - 170980..171177 (+) 198 WP_369901588.1 DUF951 domain-containing protein -
  AB8E30_RS01010 (AB8E30_01010) ychF 171300..172400 (+) 1101 WP_369901589.1 redox-regulated ATPase YchF -
  AB8E30_RS01015 (AB8E30_01015) rpsF 172779..173069 (+) 291 WP_369901590.1 30S ribosomal protein S6 -
  AB8E30_RS01020 (AB8E30_01020) ssbA 173098..173610 (+) 513 WP_369901591.1 single-stranded DNA-binding protein Machinery gene
  AB8E30_RS01025 (AB8E30_01025) rpsR 173656..173889 (+) 234 WP_034643197.1 30S ribosomal protein S18 -
  AB8E30_RS01030 (AB8E30_01030) - 173985..174917 (+) 933 WP_369901592.1 YybS family protein -
  AB8E30_RS01035 (AB8E30_01035) - 175025..176998 (+) 1974 WP_369901593.1 DHH family phosphoesterase -
  AB8E30_RS01040 (AB8E30_01040) rplI 176995..177441 (+) 447 WP_369901594.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18590.38 Da        Isoelectric Point: 5.2339

>NTDB_id=1032617 AB8E30_RS01020 WP_369901591.1 173098..173610(+) (ssbA) [Bacillus manliponensis strain jeju3-1]
MMNRVLLVGRLTKDPDLRYTPNGVAVATFTLAVNRTFTNQQGEREADFINCVIWRKQAENVANFLKKGSLAGVDGRLHTR
NYEGQDGKRVYVTEVVAENVQFLEPRNGGEQRGSFNQQPSGAGYGNQGSQNPFGQSGNSSNSGNSGFTKNDDPFANVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1032617 AB8E30_RS01020 WP_369901591.1 173098..173610(+) (ssbA) [Bacillus manliponensis strain jeju3-1]
TTGATGAATCGCGTTTTACTCGTTGGTCGTTTAACTAAAGACCCTGATTTACGTTACACGCCAAATGGTGTTGCAGTAGC
TACTTTCACGTTAGCTGTAAATCGTACATTTACGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAGAACGTGGCGAACTTTTTGAAAAAGGGGAGCTTAGCAGGCGTAGATGGACGTCTTCATACTCGT
AATTACGAGGGACAAGATGGAAAACGTGTATATGTAACAGAAGTGGTTGCAGAGAACGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGATACGGAAATCAAGGCTCTCAAAACCCGTTTG
GTCAATCTGGTAATTCTAGCAATTCTGGTAATTCTGGATTTACAAAGAATGACGATCCATTCGCAAATGTAGGTCAACCG
ATCGACATTTCGGATGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.989

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

62.857

100

0.647
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388
  ssb Glaesserella parasuis strain SC1401

35.955

100

0.376

Multiple sequence alignment