Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LSAJ54_RS01825 Genome accession   NZ_LT960790
Coordinates   391171..391782 (+) Length   203 a.a.
NCBI ID   WP_099947253.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain J54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 386171..396782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAJ54_RS01810 (LSAJ54_0384) hexB 387838..389799 (+) 1962 WP_146105228.1 DNA mismatch repair endonuclease MutL Machinery gene
  LSAJ54_RS01815 (LSAJ54_0385) - 389799..390344 (+) 546 WP_099947252.1 Maf family protein -
  LSAJ54_RS01820 (LSAJ54_0386) - 390357..390920 (+) 564 WP_197704868.1 TIGR00730 family Rossman fold protein -
  LSAJ54_RS01825 (LSAJ54_0387) ruvA 391171..391782 (+) 612 WP_099947253.1 Holliday junction branch migration protein RuvA Machinery gene
  LSAJ54_RS01830 (LSAJ54_0388) ruvB 391795..392802 (+) 1008 WP_011374076.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LSAJ54_RS01835 (LSAJ54_0389) queA 392817..393848 (+) 1032 WP_011374077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LSAJ54_RS01840 (LSAJ54_0390) - 393875..394396 (+) 522 WP_056947794.1 GNAT family N-acetyltransferase -
  LSAJ54_RS01845 (LSAJ54_0391) arcA 394602..395837 (+) 1236 WP_056947797.1 arginine deiminase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22129.26 Da        Isoelectric Point: 4.8129

>NTDB_id=1032585 LSAJ54_RS01825 WP_099947253.1 391171..391782(+) (ruvA) [Latilactobacillus sakei strain J54]
MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEVVQIYVHQAVRDTDITLFGFYDLDEKQLFQKLISVSGI
GPKSALAILANSDHSGLIQAITNDDIGYLTKFPGVGKKTAQQIALDLKGKLGDLEQSATLVGQTAIDLGSQGDSPELSDA
LAALSALGYSAREVKAITPKLTDFAAQTTDQYLREGLRLLMKK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1032585 LSAJ54_RS01825 WP_099947253.1 391171..391782(+) (ruvA) [Latilactobacillus sakei strain J54]
ATGTATGAATATTTAAAGGGTTTAGTGACGGCGGTTAATCCGTATTATGTTGTTTTGGAAGTTCAAGGAATTGGCTACCA
ATTACAAGTTGCTAATCCATATCGCTATACAGAATCAATGAGCGAAGTGGTTCAAATTTATGTCCACCAAGCGGTACGCG
ATACTGATATTACGCTTTTTGGTTTTTACGACTTAGATGAAAAACAACTTTTCCAAAAATTAATCAGTGTTTCCGGGATT
GGTCCCAAGAGTGCCTTGGCAATTTTGGCCAACAGCGACCATTCTGGTTTAATTCAAGCGATTACGAACGATGATATTGG
GTACTTAACGAAGTTCCCAGGTGTCGGGAAGAAGACGGCCCAACAGATTGCCCTAGACCTTAAAGGTAAGTTAGGCGATC
TAGAACAAAGCGCAACGTTAGTCGGTCAAACGGCAATTGATTTAGGCAGCCAAGGCGATTCACCTGAATTAAGTGACGCG
CTAGCAGCCTTGAGTGCGCTTGGCTATTCCGCACGGGAAGTCAAAGCGATTACGCCTAAGTTAACTGATTTTGCAGCGCA
AACAACTGATCAGTATCTCAGAGAAGGTTTGCGGTTATTGATGAAGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(157-201)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

48.78

100

0.493
  ruvA Streptococcus pneumoniae R6

48.78

100

0.493
  ruvA Streptococcus pneumoniae D39

48.78

100

0.493
  ruvA Bacillus subtilis subsp. subtilis str. 168

46.078

100

0.463