Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   LSAJ54_RS01810 Genome accession   NZ_LT960790
Coordinates   387838..389799 (+) Length   653 a.a.
NCBI ID   WP_146105228.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain J54     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 382838..394799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAJ54_RS01800 (LSAJ54_0382) - 384383..385189 (+) 807 WP_011374070.1 TIGR00282 family metallophosphoesterase -
  LSAJ54_RS01805 (LSAJ54_0383) hexA 385211..387814 (+) 2604 WP_099947250.1 DNA mismatch repair protein MutS Machinery gene
  LSAJ54_RS01810 (LSAJ54_0384) hexB 387838..389799 (+) 1962 WP_146105228.1 DNA mismatch repair endonuclease MutL Machinery gene
  LSAJ54_RS01815 (LSAJ54_0385) - 389799..390344 (+) 546 WP_099947252.1 Maf family protein -
  LSAJ54_RS01820 (LSAJ54_0386) - 390357..390920 (+) 564 WP_197704868.1 TIGR00730 family Rossman fold protein -
  LSAJ54_RS01825 (LSAJ54_0387) ruvA 391171..391782 (+) 612 WP_099947253.1 Holliday junction branch migration protein RuvA Machinery gene
  LSAJ54_RS01830 (LSAJ54_0388) ruvB 391795..392802 (+) 1008 WP_011374076.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LSAJ54_RS01835 (LSAJ54_0389) queA 392817..393848 (+) 1032 WP_011374077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LSAJ54_RS01840 (LSAJ54_0390) - 393875..394396 (+) 522 WP_056947794.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72689.23 Da        Isoelectric Point: 5.8461

>NTDB_id=1032584 LSAJ54_RS01810 WP_146105228.1 387838..389799(+) (hexB) [Latilactobacillus sakei strain J54]
MGKIHELSEILSNQIAAGEVIERPASVVKELVENAIDANSTQVDIVVEQAGLQMIQVIDNGDGIEPEDVPVAFKRHATSK
IATRQDLFKIQSLGFRGEALASIASVSDLTIETATADSLGTFAHFKGGMLEEQKTNPIRPGTAITVRDLFFNTPARLKYV
KTFQTELANIVDIVNRLAMSHPQIAFTLTNDDHLLLKTAGNNDLKQTIAGIYGVTMAKKLLAVSASDLDFKLTGYVSLPE
LTRATRNYLSILINGRFIKNYQLNKAIIKGYGSKLMVGRYPIAVLAIEMDPLLIDVNVHPTKQEVRLSKEAALMTLIEGA
IKERLATENLIPDAMQNLKRTKTVDVDQLQMNLNQITQERRHPSGTVRPVSPMPAPTTKPVTPEIAETETPLAAPTAKAP
AMTPKRPLFEQPQALAKWDQKYATEAVGKPFGDQVVDETDESDETVAEPTVRFPELRYIGQLHSTFLLAEGEDGFYILDQ
HAAQERIKYEYYREKIGEVSTSVQNLLVPLVLEYPNSDALKIQEKTELLASVGIQLENFGQNSFVVHSHPIWIEQGQEEM
TIRGMIDDVLKDGRISIAQFREKTAIMMSCKQSIKAHHHLDDAQAKALLADLAKTENPFNCPHGRPVLIHYTQKDLEKMF
KRIQEPHHSWEGE

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=1032584 LSAJ54_RS01810 WP_146105228.1 387838..389799(+) (hexB) [Latilactobacillus sakei strain J54]
ATGGGGAAAATTCATGAACTGTCGGAAATTCTAAGTAATCAAATTGCGGCGGGGGAGGTTATTGAACGCCCCGCCTCAGT
GGTCAAGGAATTGGTTGAAAACGCGATTGATGCCAATAGTACGCAAGTCGATATTGTTGTTGAACAGGCCGGTTTACAGA
TGATTCAAGTGATCGATAACGGCGACGGGATTGAACCAGAAGATGTACCAGTCGCCTTTAAGCGGCATGCCACCAGTAAG
ATTGCGACCCGTCAAGATTTGTTCAAGATTCAATCGTTAGGGTTTCGGGGAGAAGCGTTAGCTAGTATCGCGTCCGTTTC
CGATTTAACGATTGAAACGGCAACTGCGGACTCTCTAGGAACCTTTGCTCATTTTAAGGGTGGTATGTTAGAAGAACAAA
AAACAAATCCGATTCGACCGGGGACGGCGATTACGGTGCGGGATTTATTCTTTAATACACCGGCACGATTGAAATACGTG
AAGACTTTTCAGACCGAATTGGCAAACATTGTCGATATCGTCAATCGATTAGCAATGAGTCATCCACAGATTGCCTTTAC
GCTAACCAATGATGATCATCTACTTTTAAAAACGGCTGGCAACAATGATTTGAAACAAACGATCGCCGGTATTTATGGCG
TCACCATGGCGAAGAAACTTTTGGCCGTGAGTGCTTCGGATTTAGATTTTAAACTAACAGGCTATGTGTCGCTGCCGGAA
TTAACACGGGCAACGCGTAATTATTTGTCGATTTTAATCAATGGTCGGTTTATTAAAAACTACCAATTGAATAAGGCCAT
CATCAAGGGCTACGGCTCTAAATTGATGGTTGGCCGCTATCCAATCGCCGTCTTAGCGATTGAGATGGATCCGCTATTGA
TTGATGTCAATGTGCATCCAACGAAACAGGAAGTTCGCTTAAGCAAAGAAGCTGCCTTGATGACCTTGATTGAAGGTGCA
ATCAAAGAAAGACTGGCAACCGAGAATTTAATTCCAGATGCCATGCAAAATTTGAAACGGACCAAGACGGTAGATGTTGA
TCAGCTCCAGATGAATTTAAACCAAATTACACAAGAACGACGGCACCCAAGCGGTACGGTACGACCAGTCAGTCCAATGC
CAGCCCCAACGACCAAACCGGTGACACCCGAAATTGCGGAAACCGAAACGCCGTTAGCCGCACCAACTGCTAAAGCGCCG
GCAATGACACCGAAGCGGCCCTTATTTGAGCAACCCCAGGCATTGGCCAAGTGGGATCAGAAGTATGCGACCGAAGCGGT
TGGGAAGCCGTTTGGTGACCAAGTGGTAGACGAAACGGACGAAAGCGATGAAACCGTGGCCGAACCCACCGTTCGTTTTC
CCGAATTACGCTACATTGGGCAACTGCATAGTACTTTCTTATTAGCAGAAGGTGAAGATGGTTTTTATATATTGGATCAA
CACGCTGCGCAAGAACGGATTAAGTACGAATATTACCGAGAAAAAATTGGGGAAGTCAGCACCTCTGTGCAAAACTTGTT
AGTACCGCTTGTTTTGGAATATCCGAATAGTGATGCGCTAAAGATTCAGGAAAAAACTGAACTTTTAGCCTCAGTTGGAA
TTCAATTAGAAAATTTTGGTCAGAATAGTTTTGTGGTCCACAGTCACCCAATTTGGATTGAACAGGGACAAGAGGAAATG
ACGATTCGTGGGATGATTGACGATGTTTTAAAAGACGGCCGCATTAGTATTGCCCAATTTCGTGAGAAGACGGCAATCAT
GATGAGCTGTAAGCAATCAATCAAGGCACACCATCATTTAGATGATGCCCAGGCCAAAGCGCTTCTGGCTGATTTAGCGA
AGACCGAAAATCCGTTTAATTGTCCGCATGGACGCCCCGTTTTGATTCACTATACGCAAAAAGATTTGGAAAAGATGTTT
AAACGGATTCAAGAACCACATCATAGTTGGGAGGGCGAATAA

Domains

Predicted by InterProScan.

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-325)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-138)

MutL C terminal dimerisation domain (MutL_C)

(456-600)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

50.76

100

0.511