Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AB8E26_RS12250 Genome accession   NZ_CP165963
Coordinates   2706876..2707934 (+) Length   352 a.a.
NCBI ID   WP_038686523.1    Uniprot ID   -
Organism   Stenotrophomonas rhizophila strain busan1-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2701876..2712934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E26_RS12235 (AB8E26_12245) - 2702425..2703276 (+) 852 WP_369968012.1 hypothetical protein -
  AB8E26_RS12240 (AB8E26_12250) - 2703312..2703956 (-) 645 WP_369968013.1 hypothetical protein -
  AB8E26_RS12245 (AB8E26_12255) - 2704232..2706651 (-) 2420 Protein_2394 penicillin-binding protein 1A -
  AB8E26_RS12250 (AB8E26_12260) pilM 2706876..2707934 (+) 1059 WP_038686523.1 pilus assembly protein PilM Machinery gene
  AB8E26_RS12255 (AB8E26_12265) - 2707934..2708767 (+) 834 WP_159497757.1 PilN domain-containing protein -
  AB8E26_RS12260 (AB8E26_12270) - 2708764..2709438 (+) 675 WP_128097596.1 type 4a pilus biogenesis protein PilO -
  AB8E26_RS12265 (AB8E26_12275) - 2709435..2709968 (+) 534 WP_369968014.1 pilus assembly protein PilP -
  AB8E26_RS12270 (AB8E26_12280) - 2709989..2711968 (+) 1980 WP_159497756.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37704.24 Da        Isoelectric Point: 4.4460

>NTDB_id=1032575 AB8E26_RS12250 WP_038686523.1 2706876..2707934(+) (pilM) [Stenotrophomonas rhizophila strain busan1-1]
MGLIPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVNRSGTKARHAAAA
VAGSAVITKLIPMPADLDENDMEAQVELEAVNYIPYPIEEVNLDFEVLGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLTARVMDVEAFAVENAFALVASELPIASDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1032575 AB8E26_RS12250 WP_038686523.1 2706876..2707934(+) (pilM) [Stenotrophomonas rhizophila strain busan1-1]
GTGGGGCTTATCCCAAAAAGCCAGTCGCCGCTTATTGGCGTCGACATCAGCTCGACTGCAGTAAAGCTCTTGCAGCTTTC
CCGCAGTGGCAATCGTTTCCGCGTGGAACATTACGCTGTGGAACCACTTCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCTATCCGCCGCGCCGTGAACCGTTCCGGTACGAAGGCCCGGCACGCTGCCGCAGCC
GTCGCCGGCTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGATCTGGACGAGAACGACATGGAAGCCCAGGTCGA
GCTCGAGGCGGTCAACTACATCCCGTACCCGATCGAGGAAGTGAACCTCGACTTCGAGGTGCTGGGTGCCATTCCCAACA
ACCCGGAAATGGTCCAGGTGCTGTTGGCGGCGTCGCGGTCGGAGAACGTGGAGCTGCGCCAGTCGGCGCTGGAGCTCGGC
GGGCTGACCGCCCGGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTTGCCCTGGTCGCCAGCGAGCTGCCGAT
CGCCAGCGATGGCGTGGTCGCCCTGGTGGACATCGGTGCCACCATGACCACCCTGAACGTCCTGCGCGGCGGGCGGAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTACGGCCTCACCTACGAGGAA
GCCGGGCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAGGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCCGGTAGCGAATTCAACCGTGTGGACCACATCGTGCTGGCCGGCG
GGTGCGCTGCGCTGGCCGGCCTGCCGGAGATGGTGGAAGAACAGCTGGGCGTGGCCACCGTGGTGGCCAACCCGCTGGCA
CAGATGACCCTGGGTCCCAAGGTCCAGGCGCATGCCCTGGCCCAGGACGCCCCGGCGCTGATGATTGCCACCGGTCTGGC
GCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  comM Acinetobacter nosocomialis M2

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.009

99.716

0.469

Multiple sequence alignment