Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3K28_RS22905 Genome accession   NZ_CP165737
Coordinates   4707035..4707571 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain PEC1013     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4702035..4712571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3K28_RS22885 soxR 4703763..4704227 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  AB3K28_RS22890 soxS 4704313..4704636 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  AB3K28_RS22895 pdeC 4704639..4706225 (-) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  AB3K28_RS22900 yjcB 4706655..4706936 (+) 282 WP_001295689.1 YjcB family protein -
  AB3K28_RS22905 ssb 4707035..4707571 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AB3K28_RS22910 uvrA 4707826..4710648 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  AB3K28_RS22915 yjbR 4710683..4711039 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  AB3K28_RS22920 yjbQ 4711043..4711459 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AB3K28_RS22925 aphA 4711570..4712283 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1031419 AB3K28_RS22905 WP_000168305.1 4707035..4707571(-) (ssb) [Escherichia coli strain PEC1013]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1031419 AB3K28_RS22905 WP_000168305.1 4707035..4707571(-) (ssb) [Escherichia coli strain PEC1013]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment