Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SL318_RS01865 | Genome accession | NZ_CP165630 |
| Coordinates | 414620..415090 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain BSN54 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 404824..445084 | 414620..415090 | within | 0 |
Gene organization within MGE regions
Location: 404824..445084
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SL318_RS01785 (SL318_01785) | - | 404824..406029 (-) | 1206 | WP_000264186.1 | tyrosine-type recombinase/integrase | - |
| SL318_RS01790 (SL318_01790) | - | 406238..406918 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| SL318_RS01795 (SL318_01795) | - | 406950..407588 (-) | 639 | WP_000874708.1 | S24 family peptidase | - |
| SL318_RS01800 (SL318_01800) | - | 407778..408032 (+) | 255 | WP_001106626.1 | helix-turn-helix domain-containing protein | - |
| SL318_RS01805 (SL318_01805) | - | 408047..408208 (+) | 162 | WP_001153176.1 | hypothetical protein | - |
| SL318_RS01810 (SL318_01810) | - | 408169..408339 (-) | 171 | WP_001280594.1 | hypothetical protein | - |
| SL318_RS01815 (SL318_01815) | - | 408781..408966 (+) | 186 | WP_000933364.1 | helix-turn-helix domain-containing protein | - |
| SL318_RS01820 (SL318_01820) | - | 408968..409711 (+) | 744 | WP_001148623.1 | phage antirepressor KilAC domain-containing protein | - |
| SL318_RS01825 (SL318_01825) | - | 409736..409835 (+) | 100 | Protein_362 | hypothetical protein | - |
| SL318_RS01830 (SL318_01830) | - | 409984..410247 (+) | 264 | WP_001124198.1 | helix-turn-helix domain-containing protein | - |
| SL318_RS01835 (SL318_01835) | - | 410259..410420 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| SL318_RS01840 (SL318_01840) | - | 410515..410775 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| SL318_RS01845 (SL318_01845) | - | 410784..411047 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| SL318_RS01850 (SL318_01850) | - | 411044..412999 (+) | 1956 | WP_320237218.1 | AAA family ATPase | - |
| SL318_RS01855 (SL318_01855) | - | 413001..413921 (+) | 921 | WP_000138481.1 | recombinase RecT | - |
| SL318_RS01860 (SL318_01860) | - | 414002..414619 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| SL318_RS01865 (SL318_01865) | ssbA | 414620..415090 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| SL318_RS01870 (SL318_01870) | - | 415120..416013 (+) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| SL318_RS01875 (SL318_01875) | - | 416020..416238 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| SL318_RS01880 (SL318_01880) | - | 416247..416651 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| SL318_RS01885 (SL318_01885) | - | 416664..417035 (+) | 372 | WP_374936582.1 | SA1788 family PVL leukocidin-associated protein | - |
| SL318_RS01890 (SL318_01890) | - | 417036..417284 (+) | 249 | WP_001614809.1 | SAV1978 family virulence-associated passenger protein | - |
| SL318_RS01895 (SL318_01895) | - | 417299..417697 (+) | 399 | Protein_376 | hypothetical protein | - |
| SL318_RS01900 (SL318_01900) | - | 417698..417892 (+) | 195 | Protein_377 | hypothetical protein | - |
| SL318_RS01905 (SL318_01905) | - | 417885..418139 (+) | 255 | WP_001065104.1 | DUF1024 family protein | - |
| SL318_RS01910 (SL318_01910) | - | 418126..418296 (+) | 171 | WP_000714407.1 | hypothetical protein | - |
| SL318_RS01915 (SL318_01915) | - | 418289..418825 (+) | 537 | WP_001066454.1 | dUTPase | - |
| SL318_RS01920 (SL318_01920) | - | 418862..419107 (+) | 246 | WP_374936583.1 | hypothetical protein | - |
| SL318_RS01925 (SL318_01925) | - | 419104..419310 (+) | 207 | WP_374936584.1 | DUF1381 domain-containing protein | - |
| SL318_RS01930 (SL318_01930) | rinB | 419307..419480 (+) | 174 | WP_000595256.1 | transcriptional activator RinB | - |
| SL318_RS01935 (SL318_01935) | - | 419481..419882 (+) | 402 | WP_000286968.1 | hypothetical protein | - |
| SL318_RS01940 (SL318_01940) | - | 420237..420731 (+) | 495 | WP_320237221.1 | terminase small subunit | - |
| SL318_RS01945 (SL318_01945) | - | 420724..421932 (+) | 1209 | WP_001606760.1 | PBSX family phage terminase large subunit | - |
| SL318_RS01950 (SL318_01950) | - | 421946..423364 (+) | 1419 | WP_000283553.1 | phage portal protein | - |
| SL318_RS01955 (SL318_01955) | - | 423303..424283 (+) | 981 | WP_001795666.1 | phage head morphogenesis protein | - |
| SL318_RS01960 (SL318_01960) | - | 424381..424977 (+) | 597 | WP_000366932.1 | phage scaffolding protein | - |
| SL318_RS01965 (SL318_01965) | - | 424998..425822 (+) | 825 | WP_001135558.1 | N4-gp56 family major capsid protein | - |
| SL318_RS01970 (SL318_01970) | - | 425839..426165 (+) | 327 | WP_000278799.1 | Rho termination factor N-terminal domain-containing protein | - |
| SL318_RS01975 (SL318_01975) | - | 426165..426479 (+) | 315 | WP_000338935.1 | phage head-tail connector protein | - |
| SL318_RS01980 (SL318_01980) | - | 426472..426807 (+) | 336 | WP_000482986.1 | phage head closure protein | - |
| SL318_RS01985 (SL318_01985) | - | 426794..427207 (+) | 414 | WP_001151335.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| SL318_RS01990 (SL318_01990) | - | 427220..427657 (+) | 438 | WP_000270196.1 | DUF3168 domain-containing protein | - |
| SL318_RS01995 (SL318_01995) | - | 427644..428204 (+) | 561 | WP_000046067.1 | hypothetical protein | - |
| SL318_RS02000 (SL318_02000) | - | 428265..428759 (+) | 495 | WP_000141082.1 | tail assembly chaperone | - |
| SL318_RS02005 (SL318_02005) | - | 428780..429121 (+) | 342 | WP_001580347.1 | hypothetical protein | - |
| SL318_RS02010 (SL318_02010) | - | 429124..432093 (+) | 2970 | WP_320237222.1 | terminase | - |
| SL318_RS02015 (SL318_02015) | - | 432108..433043 (+) | 936 | WP_000560196.1 | phage tail domain-containing protein | - |
| SL318_RS02020 (SL318_02020) | - | 433054..434940 (+) | 1887 | WP_031786321.1 | SGNH/GDSL hydrolase family protein | - |
| SL318_RS02025 (SL318_02025) | - | 434953..436851 (+) | 1899 | WP_031864634.1 | hypothetical protein | - |
| SL318_RS02030 (SL318_02030) | - | 436851..438674 (+) | 1824 | WP_031862517.1 | phage baseplate upper protein | - |
| SL318_RS02035 (SL318_02035) | - | 438674..439051 (+) | 378 | WP_000705909.1 | DUF2977 domain-containing protein | - |
| SL318_RS02040 (SL318_02040) | - | 439055..439228 (+) | 174 | WP_001790193.1 | XkdX family protein | - |
| SL318_RS02045 (SL318_02045) | - | 439269..439568 (+) | 300 | WP_000466769.1 | DUF2951 domain-containing protein | - |
| SL318_RS02050 (SL318_02050) | - | 439705..441579 (+) | 1875 | WP_016187665.1 | glucosaminidase domain-containing protein | - |
| SL318_RS02055 (SL318_02055) | - | 441592..442764 (+) | 1173 | WP_000276627.1 | BppU family phage baseplate upper protein | - |
| SL318_RS02060 (SL318_02060) | - | 442770..443165 (+) | 396 | WP_000398878.1 | hypothetical protein | - |
| SL318_RS02065 (SL318_02065) | - | 443221..443658 (+) | 438 | WP_374936585.1 | phage holin | - |
| SL318_RS02070 (SL318_02070) | - | 443639..445084 (+) | 1446 | WP_001148125.1 | SH3 domain-containing protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=1030997 SL318_RS01865 WP_000934759.1 414620..415090(+) (ssbA) [Staphylococcus aureus strain BSN54]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1030997 SL318_RS01865 WP_000934759.1 414620..415090(+) (ssbA) [Staphylococcus aureus strain BSN54]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |