Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB3D65_RS16865 Genome accession   NZ_CP165606
Coordinates   3322257..3322775 (+) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain BP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3317257..3327775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS16845 (AB3D65_16845) - 3318335..3318541 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  AB3D65_RS16850 (AB3D65_16850) - 3318588..3320591 (+) 2004 WP_369547356.1 molybdopterin-dependent oxidoreductase -
  AB3D65_RS16855 (AB3D65_16855) ychF 3320718..3321818 (+) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  AB3D65_RS16860 (AB3D65_16860) rpsF 3321930..3322217 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  AB3D65_RS16865 (AB3D65_16865) ssbA 3322257..3322775 (+) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  AB3D65_RS16870 (AB3D65_16870) rpsR 3322819..3323058 (+) 240 WP_029325793.1 30S ribosomal protein S18 -
  AB3D65_RS16875 (AB3D65_16875) - 3323246..3323827 (+) 582 WP_059367416.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  AB3D65_RS16880 (AB3D65_16880) - 3323824..3324381 (+) 558 WP_369547360.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AB3D65_RS16885 (AB3D65_16885) xth 3324378..3325136 (+) 759 WP_059367423.1 exodeoxyribonuclease III -
  AB3D65_RS16890 (AB3D65_16890) - 3325199..3326137 (+) 939 WP_369547362.1 LacI family DNA-binding transcriptional regulator -
  AB3D65_RS16895 (AB3D65_16895) - 3326194..3326574 (+) 381 WP_369547363.1 VOC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1030829 AB3D65_RS16865 WP_004392979.1 3322257..3322775(+) (ssbA) [Bacillus velezensis strain BP1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1030829 AB3D65_RS16865 WP_004392979.1 3322257..3322775(+) (ssbA) [Bacillus velezensis strain BP1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAACCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment