Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AB6L51_RS11745 Genome accession   NZ_CP163562
Coordinates   2277247..2277540 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain BC255T1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2272247..2282540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6L51_RS11695 (AB6L51_11710) sinR 2272416..2272751 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  AB6L51_RS11700 (AB6L51_11715) tasA 2272819..2273619 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  AB6L51_RS11705 (AB6L51_11720) sipW 2273678..2274250 (-) 573 WP_017357979.1 signal peptidase I SipW -
  AB6L51_RS11710 (AB6L51_11725) tapA 2274300..2274827 (-) 528 WP_035390809.1 amyloid fiber anchoring/assembly protein TapA -
  AB6L51_RS11715 (AB6L51_11730) - 2275080..2275406 (+) 327 WP_007501224.1 DUF3889 domain-containing protein -
  AB6L51_RS11720 (AB6L51_11735) - 2275442..2275630 (-) 189 WP_017367591.1 YqzE family protein -
  AB6L51_RS11725 (AB6L51_11740) - 2275691..2276074 (-) 384 WP_008342190.1 competence type IV pilus minor pilin ComGG -
  AB6L51_RS11730 (AB6L51_11745) comGF 2276071..2276568 (-) 498 WP_019743636.1 competence type IV pilus minor pilin ComGF -
  AB6L51_RS11735 (AB6L51_11750) comGE 2276510..2276824 (-) 315 WP_008342188.1 competence type IV pilus minor pilin ComGE -
  AB6L51_RS11740 (AB6L51_11755) comGD 2276808..2277254 (-) 447 WP_407974424.1 competence type IV pilus minor pilin ComGD -
  AB6L51_RS11745 (AB6L51_11760) comGC 2277247..2277540 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  AB6L51_RS11750 (AB6L51_11765) comGB 2277557..2278597 (-) 1041 WP_251185766.1 competence type IV pilus assembly protein ComGB -
  AB6L51_RS11755 (AB6L51_11770) comGA 2278578..2279648 (-) 1071 WP_035390817.1 competence type IV pilus ATPase ComGA Machinery gene
  AB6L51_RS11760 (AB6L51_11775) - 2280103..2280975 (-) 873 WP_035390819.1 STAS domain-containing protein -
  AB6L51_RS11770 (AB6L51_11785) - 2281201..2281581 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AB6L51_RS11775 (AB6L51_11790) - 2281794..2282036 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=1030675 AB6L51_RS11745 WP_008342186.1 2277247..2277540(-) (comGC) [Bacillus altitudinis strain BC255T1]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1030675 AB6L51_RS11745 WP_008342186.1 2277247..2277540(-) (comGC) [Bacillus altitudinis strain BC255T1]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCGAATGGAAAGGCAATTTTTATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment