Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB6L51_RS11695 Genome accession   NZ_CP163562
Coordinates   2272416..2272751 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BC255T1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2267416..2277751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6L51_RS11675 (AB6L51_11690) gcvT 2267894..2268991 (-) 1098 WP_144739935.1 glycine cleavage system aminomethyltransferase GcvT -
  AB6L51_RS11680 (AB6L51_11695) - 2269551..2271221 (+) 1671 WP_144739932.1 DEAD/DEAH box helicase -
  AB6L51_RS11685 (AB6L51_11700) - 2271236..2272033 (+) 798 WP_048001388.1 YqhG family protein -
  AB6L51_RS11690 (AB6L51_11705) - 2272218..2272382 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  AB6L51_RS11695 (AB6L51_11710) sinR 2272416..2272751 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  AB6L51_RS11700 (AB6L51_11715) tasA 2272819..2273619 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  AB6L51_RS11705 (AB6L51_11720) sipW 2273678..2274250 (-) 573 WP_017357979.1 signal peptidase I SipW -
  AB6L51_RS11710 (AB6L51_11725) tapA 2274300..2274827 (-) 528 WP_035390809.1 amyloid fiber anchoring/assembly protein TapA -
  AB6L51_RS11715 (AB6L51_11730) - 2275080..2275406 (+) 327 WP_007501224.1 DUF3889 domain-containing protein -
  AB6L51_RS11720 (AB6L51_11735) - 2275442..2275630 (-) 189 WP_017367591.1 YqzE family protein -
  AB6L51_RS11725 (AB6L51_11740) - 2275691..2276074 (-) 384 WP_008342190.1 competence type IV pilus minor pilin ComGG -
  AB6L51_RS11730 (AB6L51_11745) comGF 2276071..2276568 (-) 498 WP_019743636.1 competence type IV pilus minor pilin ComGF -
  AB6L51_RS11735 (AB6L51_11750) comGE 2276510..2276824 (-) 315 WP_008342188.1 competence type IV pilus minor pilin ComGE -
  AB6L51_RS11740 (AB6L51_11755) comGD 2276808..2277254 (-) 447 WP_407974424.1 competence type IV pilus minor pilin ComGD -
  AB6L51_RS11745 (AB6L51_11760) comGC 2277247..2277540 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=1030674 AB6L51_RS11695 WP_017357978.1 2272416..2272751(+) (sinR) [Bacillus altitudinis strain BC255T1]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1030674 AB6L51_RS11695 WP_017357978.1 2272416..2272751(+) (sinR) [Bacillus altitudinis strain BC255T1]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment