Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AB6L51_RS11755 Genome accession   NZ_CP163562
Coordinates   2278578..2279648 (-) Length   356 a.a.
NCBI ID   WP_035390817.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BC255T1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2273578..2284648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6L51_RS11705 (AB6L51_11720) sipW 2273678..2274250 (-) 573 WP_017357979.1 signal peptidase I SipW -
  AB6L51_RS11710 (AB6L51_11725) tapA 2274300..2274827 (-) 528 WP_035390809.1 amyloid fiber anchoring/assembly protein TapA -
  AB6L51_RS11715 (AB6L51_11730) - 2275080..2275406 (+) 327 WP_007501224.1 DUF3889 domain-containing protein -
  AB6L51_RS11720 (AB6L51_11735) - 2275442..2275630 (-) 189 WP_017367591.1 YqzE family protein -
  AB6L51_RS11725 (AB6L51_11740) - 2275691..2276074 (-) 384 WP_008342190.1 competence type IV pilus minor pilin ComGG -
  AB6L51_RS11730 (AB6L51_11745) comGF 2276071..2276568 (-) 498 WP_019743636.1 competence type IV pilus minor pilin ComGF -
  AB6L51_RS11735 (AB6L51_11750) comGE 2276510..2276824 (-) 315 WP_008342188.1 competence type IV pilus minor pilin ComGE -
  AB6L51_RS11740 (AB6L51_11755) comGD 2276808..2277254 (-) 447 WP_407974424.1 competence type IV pilus minor pilin ComGD -
  AB6L51_RS11745 (AB6L51_11760) comGC 2277247..2277540 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  AB6L51_RS11750 (AB6L51_11765) comGB 2277557..2278597 (-) 1041 WP_251185766.1 competence type IV pilus assembly protein ComGB -
  AB6L51_RS11755 (AB6L51_11770) comGA 2278578..2279648 (-) 1071 WP_035390817.1 competence type IV pilus ATPase ComGA Machinery gene
  AB6L51_RS11760 (AB6L51_11775) - 2280103..2280975 (-) 873 WP_035390819.1 STAS domain-containing protein -
  AB6L51_RS11770 (AB6L51_11785) - 2281201..2281581 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AB6L51_RS11775 (AB6L51_11790) - 2281794..2282036 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  AB6L51_RS11780 (AB6L51_11795) - 2282085..2282723 (-) 639 WP_017357989.1 MBL fold metallo-hydrolase -
  AB6L51_RS11785 (AB6L51_11800) - 2282884..2283057 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  AB6L51_RS11790 (AB6L51_11805) - 2283280..2283594 (-) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40396.75 Da        Isoelectric Point: 9.0449

>NTDB_id=1030676 AB6L51_RS11755 WP_035390817.1 2278578..2279648(-) (comGA) [Bacillus altitudinis strain BC255T1]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASTRLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEANL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1030676 AB6L51_RS11755 WP_035390817.1 2278578..2279648(-) (comGA) [Bacillus altitudinis strain BC255T1]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGTTAGAAGAGGCGTGCCGAATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGATCATTGGCT
GTGATGCTAAGACGTGGTCAAGTGTTTGTTCGGCTCTCTACACTACCAACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCTAAAACAAAGTATTTGTCACTGTTCCCGAAAGCTTCAACGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACAGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGGAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGTTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGCCATTTAGTCATGAGCACACTGCAT
GCAAAAAATGCAAAAGGAGCTCTTTATCGAATGCTGGAATTTGGTGTGACGATGAATGAACTCGAACAAACAATGGTTGC
CATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAACCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.646

Multiple sequence alignment