Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AACH48_RS19830 Genome accession   NZ_AP027942
Coordinates   4322833..4323408 (+) Length   191 a.a.
NCBI ID   WP_005306061.1    Uniprot ID   K1JJU3
Organism   Aeromonas dhakensis strain VA84     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4317833..4328408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH48_RS19820 (VAWG005_38250) uvrA 4318733..4321561 (-) 2829 WP_019838606.1 excinuclease ABC subunit UvrA -
  AACH48_RS19825 (VAWG005_38260) - 4321657..4322316 (-) 660 WP_010635910.1 LuxR C-terminal-related transcriptional regulator -
  AACH48_RS19830 (VAWG005_38270) ssb 4322833..4323408 (+) 576 WP_005306061.1 single-stranded DNA-binding protein Machinery gene
  AACH48_RS19835 (VAWG005_38280) - 4323578..4324336 (+) 759 WP_017782171.1 transporter substrate-binding domain-containing protein -
  AACH48_RS19840 - 4324420..4324545 (-) 126 WP_019445191.1 hypothetical protein -
  AACH48_RS19845 (VAWG005_38290) - 4324994..4325872 (+) 879 WP_010635891.1 cation diffusion facilitator family transporter -
  AACH48_RS19850 (VAWG005_38300) - 4325968..4326252 (+) 285 WP_017785534.1 DUF3811 domain-containing protein -
  AACH48_RS19855 (VAWG005_38310) - 4326741..4326950 (+) 210 WP_005306081.1 cold-shock protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21162.54 Da        Isoelectric Point: 5.9247

>NTDB_id=103067 AACH48_RS19830 WP_005306061.1 4322833..4323408(+) (ssb) [Aeromonas dhakensis strain VA84]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDGFSGVMQMLGGRPQGAGQGMGGQSQGNWGQPQQGMQSQQPMNQSRPAPQQNMQQQ
QGGYSRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=103067 AACH48_RS19830 WP_005306061.1 4322833..4323408(+) (ssb) [Aeromonas dhakensis strain VA84]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACCAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AGTGGCACCGCGTGGTCTTCATGGGCAAGCTGGCCGAAGTGGCGGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTG
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGAGCGGCCAGGAGCGTTACACCACCGAGGTGCTGGTCGATGGTTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGCCGGTCAGGGCATGGGCGGTCAGTCCCAGGGCAACTGGG
GTCAGCCGCAACAGGGCATGCAGTCCCAGCAGCCGATGAACCAGTCCCGCCCGGCTCCGCAGCAGAACATGCAGCAACAG
CAGGGCGGTTATAGCCGTCCGGCCCAGCAGCCGCAGTCCGCTCCGCCGGTATACAACGAGCCACCGATGGATTTCGACGA
CGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K1JJU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.388

100

0.712
  ssb Glaesserella parasuis strain SC1401

52.381

98.953

0.518
  ssb Neisseria gonorrhoeae MS11

47.059

97.906

0.461
  ssb Neisseria meningitidis MC58

45.699

97.382

0.445

Multiple sequence alignment